Mikel Hernaez

According to our database, Mikel Hernaez authored at least 37 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Use of Beacon v2 for Improving Genomics Based Research in a Clinical Setting.

Daniel Naro, Jaime Delgado, Silvia Llorente, Mikel Hernaez

Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

2023

Towards a more inductive world for drug repurposing approaches.

Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez

CoRR, 2023

2022

JIND: joint integration and discrimination for automated single-cell annotation.

Mohit Goyal, Guillermo Serrano, Josepmaria Argemi, Ilan Shomorony, Mikel Hernaez, Idoia Ochoa

Bioinform., 2022

2021

An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data.

Jan Voges, Mikel Hernaez, Marco Mattavelli, Jörn Ostermann

Proc. IEEE, 2021

Towards scalable genomic data access.

Mikel Hernaez

Nat. Comput. Sci., 2021

2020

CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores.

Albert No, Mikel Hernaez, Idoia Ochoa

J. Bioinform. Comput. Biol., 2020

GABAC: an arithmetic coding solution for genomic data.

Jan Voges, Tom Paridaens, Fabian Müntefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier, Jörn Ostermann, Mikel Hernaez

Bioinform., 2020

GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form.

Qingxi Meng, Idoia Ochoa, Mikel Hernaez

Bioinform., 2020

Comparison of single and module-based methods for modeling gene regulatory networks.

Mikel Hernaez, Charles Blatti, Olivier Gevaert

Bioinform., 2020

2019

SPRING: a next-generation compressor for FASTQ data.

Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2019

AliCo: A New Efficient Representation for SAM Files.

Idoia Ochoa, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez

Proceedings of the Data Compression Conference, 2019

2018

CALQ: compression of quality values of aligned sequencing data.

Jan Voges, Jörn Ostermann, Mikel Hernaez

Bioinform., 2018

FaStore: a space-saving solution for raw sequencing data.

Lukasz Roguski, Idoia Ochoa, Mikel Hernaez, Sebastian Deorowicz

Bioinform., 2018

QVZ: lossy compression of quality values.

Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman

Bioinform., 2018

2017

Effect of lossy compression of quality scores on variant calling.

Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley

Briefings Bioinform., 2017

GeneComp, a New Reference-Based Compressor for SAM Files.

Reggy Long, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Proceedings of the 2017 Data Compression Conference, 2017

2016

GTRAC: fast retrieval from compressed collections of genomic variants.

Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Bioinform., 2016

Comment on: 'ERGC: an efficient referential genome compression algorithm'.

Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2016

CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores.

Idoia Ochoa, Albert No, Mikel Hernaez, Tsachy Weissman

Proceedings of the 2016 IEEE Information Theory Workshop, 2016

Denoising of Quality Scores for Boosted Inference and Reduced Storage.

Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley

Proceedings of the 2016 Data Compression Conference, 2016

A Cluster-Based Approach to Compression of Quality Scores.

Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Proceedings of the 2016 Data Compression Conference, 2016

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.

Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger

Proceedings of the 2016 Data Compression Conference, 2016

2015

Design of a new scheme for multi-hop wireless networks using decode-and-forward strategy.

Iker Alustiza, Mikel Hernaez, Pedro M. Crespo

EURASIP J. Wirel. Commun. Netw., 2015

iDoComp: a compression scheme for assembled genomes.

Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2015

2014

Aligned genomic data compression via improved modeling.

Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

J. Bioinform. Comput. Biol., 2014

2013

On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel.

Mikel Hernaez, Pedro M. Crespo, Javier Del Ser

IEEE J. Sel. Areas Commun., 2013

A Decode-and-Forward Scheme for Multihop Wireless Networks.

Mikel Hernaez, Iker Alustiza, Pedro M. Crespo, Javier Del Ser

Proceedings of the 78th IEEE Vehicular Technology Conference, 2013

Communication Services Empowered with a Classical Chaos Based Cryptosystem.

Gerard Vidal, Mikel Hernaez

Proceedings of the Financial Cryptography and Data Security, 2013

Teaching information theory via a simulation tool for communications systems.

Iker Alustiza, Mikel Hernaez, Xabier Insausti, Pedro M. Crespo

Proceedings of the IEEE Global Engineering Education Conference, 2013

2012

Flexible Channel Coding Approach for Short-Length Codewords.

Mikel Hernaez, Pedro M. Crespo, Javier Del Ser

IEEE Commun. Lett., 2012

2011

Joint Non-Binary LDPC-BICM and Network Coding with Iterative Decoding for the Multiple Access Relay Channel.

Mikel Hernaez, Pedro M. Crespo, Javier Del Ser

Proceedings of the 73rd IEEE Vehicular Technology Conference, 2011

A Novel Scheme for Message-Forwarding in Multi-Hop Ad-Hoc Wireless Networks.

Mikel Hernaez, Pedro M. Crespo

Proceedings of the 73rd IEEE Vehicular Technology Conference, 2011

2010

Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime.

Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez

IEEE Commun. Lett., 2010

LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation.

Idoia Ochoa, Pedro M. Crespo, Mikel Hernaez

IEEE Commun. Lett., 2010

Erratum to "serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels".

Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías

IEEE Commun. Lett., 2010

Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime.

Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez

Proceedings of the Mobile Lightweight Wireless Systems, 2010

2009

Serially-concatenated LDGM codes for correlated sources over gaussian broadcast channels.

Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías

IEEE Commun. Lett., 2009