Mikel Egaña Aranguren

According to our database, Mikel Egaña Aranguren authored at least 29 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

OntoGenix: Leveraging Large Language Models for enhanced ontology engineering from datasets.

Mikel Val-Calvo, Mikel Egaña Aranguren, Juan M. Martínez-Hernández, Ginés Almagro-Hernández, Prashant Deshmukh, José Antonio Bernabé-Díaz, Paola Espinoza-Arias, José Luis Sánchez-Fernández, Juergen Mueller, Jesualdo Tomás Fernández-Breis

Inf. Process. Manag., 2025

2024

The Transparent Relations Ontology (TRO): a vocabulary to describe conflicts of interest.

Mikel Egaña Aranguren

CoRR, 2024

The cybersecurity ontology network: The first building block for a comprehensive cybersecurity knowledge graph (short paper).

Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Alexander García Castro, Markus Rompe

Proceedings of the Joint Ontology Workshops (JOWO), 2024

2014

Translational research combining orthologous genes and human diseases with the OGOLOD dataset.

José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Boris Villazón-Terrazas, Jesualdo Tomás Fernández-Breis

Semantic Web, 2014

Special issue on Linked Data for Health Care and the Life Sciences.

Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Michel Dumontier

Semantic Web, 2014

Automatically exposing OpenLifeData via SADI semantic Web Services.

Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson

J. Biomed. Semant., 2014

Executing SADI services in Galaxy.

Mikel Egaña Aranguren, Alejandro Rodríguez González, Mark D. Wilkinson

J. Biomed. Semant., 2014

Nanopublishing Clinical Diagnoses: Tracking Diagnostic Knowledge Base Content and Utilization.

Alejandro Rodríguez González, Marcos Martínez Romero, Mikel Egaña Aranguren, Mark D. Wilkinson

Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

2013

Evaluation of the OQuaRE framework for ontology quality.

Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis, Miguela Iniesta-Moreno, Michel Dumontier, Mikel Egaña Aranguren, Stefan Schulz, Nathalie Aussenac-Gilles, Robert Stevens

Expert Syst. Appl., 2013

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana, Chris Mungall, Alejandro Rodríguez González, Mark D. Wilkinson

J. Biomed. Semant., 2013

Plant Pathogen Interactions Ontology (PPIO).

Alejandro Rodriguez Iglesias, Mikel Egaña Aranguren, Alejandro Rodríguez González, Mark D. Wilkinson

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012

Ontology Design Pattern Language Expressivity Requirements.

Matthew Horridge, Mikel Egaña Aranguren, Jonathan Mortensen, Mark A. Musen, Natalya Fridman Noy

Proceedings of the 3rd Workshop on Ontology Patterns, Boston, USA, November 12, 2012, 2012

NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform.

José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011

Semantic integration of information about orthologs and diseases: The OGO system.

José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Rodrigo Martínez-Béjar, Jesualdo Tomás Fernández-Breis, Marisa Madrid

J. Biomed. Informatics, 2011

Flexibility and utility of the cell cycle ontology.

Vladimir Mironov, Erick Antezana, Mikel Egaña, Ward Blondé, Bernard De Baets, Martin Kuiper, Robert Stevens

Appl. Ontology, 2011

OPPL-Galaxy: enhancing ontology exploitation in galaxy with OPPL.

Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

2010

A Semantic Query Interface for the OGO Platform.

José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Francisco García-Sánchez, Jesualdo Tomás Fernández-Breis

Proceedings of the Information Technology in Bio- and Medical Informatics, 2010

2009

BioGateway: a semantic systems biology tool for the life sciences.

Erick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper

BMC Bioinform., 2009

2008

In situ migration of handcrafted ontologies to reason-able forms.

Mikel Egaña Aranguren, Chris Wroe, Carole A. Goble, Robert Stevens

Data Knowl. Eng., 2008

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.

Mikel Egaña Aranguren, Erick Antezana, Martin Kuiper, Robert Stevens

BMC Bioinform., 2008

ONTO-PERL: An API for supporting the development and analysis of bio-ontologies.

Erick Antezana, Mikel Egaña, Bernard De Baets, Martin Kuiper, Vladimir Mironov

Bioinform., 2008

The Cell Cycle Ontology: An Application Ontology Supporting the Life Sciences.

Erick Antezana, Mikel Egaña, Ward Blondé, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

BioGateway: Integrated RDF for Life Science Queries.

Erick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

Structuring the Life Science Resourceome for Semantic Systems Biology: Lessons from the BioGateway Project.

Erick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

Augmenting the Expressivity of the Ontology Pre-Processor Language.

Luigi Iannone, Mikel Egaña Aranguren, Alan L. Rector, Robert Stevens

Proceedings of the Fifth OWLED Workshop on OWL: Experiences and Directions, 2008

Transforming the Axiomisation of Ontologies: The Ontology Pre-Processor Language.

Mikel Egaña, Robert Stevens, Erick Antezana

Proceedings of the Fourth OWLED Workshop on OWL: Experiences and Directions, 2008

Applying Ontology Design Patterns in Bio-ontologies.

Mikel Egaña, Alan L. Rector, Robert Stevens, Erick Antezana

Proceedings of the Knowledge Engineering: Practice and Patterns, 2008

2007

Using OWL to model biological knowledge.

Robert Stevens, Mikel Egaña Aranguren, Katy Wolstencroft, Ulrike Sattler, Nick Drummond, Matthew Horridge, Alan L. Rector

Int. J. Hum. Comput. Stud., 2007

Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL.

Mikel Egaña Aranguren, Sean Bechhofer, Phillip W. Lord, Ulrike Sattler, Robert D. Stevens

BMC Bioinform., 2007