Mikael Bodén

Orcid: 0000-0003-3548-268X

According to our database1, Mikael Bodén authored at least 61 papers between 1993 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP).
PLoS Comput. Biol., October, 2022

2020
T-Gene: improved target gene prediction.
Bioinform., 2020

2019
Correction to: Detailed prediction of protein sub-nuclear localization.
BMC Bioinform., 2019

Detailed prediction of protein sub-nuclear localization.
BMC Bioinform., 2019

2018
NLSdb - major update for database of nuclear localization signals and nuclear export signals.
Nucleic Acids Res., 2018

Effect of Binding on Enantioselectivity of Epoxide Hydrolase.
J. Chem. Inf. Model., 2018

SCRAM: a pipeline for fast index-free small RNA read alignment and visualization.
Bioinform., 2018

2017
Learning epistatic interactions from sequence-activity data to predict enantioselectivity.
J. Comput. Aided Mol. Des., 2017

PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.
Bioinform., 2017

2015
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.
Bioinform., 2015

Sequencing technologies and tools for short tandem repeat variation detection.
Briefings Bioinform., 2015

2014
Dimensionality reduction and topographic mapping of binary tensors.
Pattern Anal. Appl., 2014

2013
PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity.
BMC Bioinform., 2013

DLocalMotif: a discriminative approach for discovering local motifs in protein sequences.
Bioinform., 2013

2012
Matching Cavities in G Protein-Coupled Receptors to Infer Ligand-Binding Sites.
J. Chem. Inf. Model., 2012

NSort/DB: An Intranuclear Compartment Protein Database.
Genom. Proteom. Bioinform., 2012

Mapping the stabilome: a novel computational method for classifying metabolic protein stability.
BMC Syst. Biol., 2012

2011
A probabilistic model of nuclear import of proteins.
Bioinform., 2011

Sorting the nuclear proteome.
Bioinform., 2011

2010
Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

A Bayesian Network Model of Proteins' Association with Promyelocytic Leukemia (PML) Nuclear Bodies.
J. Comput. Biol., 2010

Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster.
Neurocomputing, 2010

The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression.
BMC Syst. Biol., 2010

The value of position-specific priors in motif discovery using MEME.
BMC Bioinform., 2010

Assigning roles to DNA regulatory motifs using comparative genomics.
Bioinform., 2010

Multilinear Decomposition and Topographic Mapping of Binary Tensors.
Proceedings of the Artificial Neural Networks - ICANN 2010, 2010

2009
It's about time: Signal recognition in staged models of protein translocation.
Pattern Recognit., 2009

MEME SUITE: tools for motif discovery and searching.
Nucleic Acids Res., 2009

Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008
Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions.
J. Comput. Biol., 2008

Predicting SUMOylation Sites.
Proceedings of the Pattern Recognition in Bioinformatics, 2008

Predicting Nucleolar Proteins Using Support-Vector Machines.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
Markovian Bias of Neural-based Architectures With Feedback Connections.
Proceedings of the Perspectives of Neural-Symbolic Integration, 2007

Computing the Reversal Distance between genomes in the Presence of Multi-gene Families via Binary Integer Programming.
J. Bioinform. Comput. Biol., 2007

Evolving spelling exercises to suit individual student needs.
Appl. Soft Comput., 2007

Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification.
Proceedings of the Pattern Recognition in Bioinformatics, 2007

A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures.
BMC Bioinform., 2006

STAR: predicting recombination sites from amino acid sequence.
BMC Bioinform., 2006

Identifying sequence regions undergoing conformational change via predicted continuum secondary structure.
Bioinform., 2006

Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway.
Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

2005
Improved access to sequential motifs: a note on the architectural bias of recurrent networks.
IEEE Trans. Neural Networks, 2005

The Applicability of Recurrent Neural Networks for Biological Sequence Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2005

Prediction of subcellular localization using sequence-biased recurrent networks.
Bioinform., 2005

Exploiting Sequence Dependencies in the Prediction of Peroxisomal Proteins.
Proceedings of the Intelligent Data Engineering and Automated Learning, 2005

Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Predicting Peroxisomal Proteins.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence).
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

Detecting residues in targeting peptides.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
Generalization by symbolic abstraction in cascaded recurrent networks.
Neurocomputing, 2004

2003
Learning the Dynamics of Embedded Clauses.
Appl. Intell., 2003

Using evolutionary noise to improve prediction of rapidly evolving targeting peptides.
Proceedings of the IEEE Congress on Evolutionary Computation, 2003

2002
On learning context-free and context-sensitive languages.
IEEE Trans. Neural Networks, 2002

Generalization by structural properties from sparse nested symbolic data.
Proceedings of the 10th Eurorean Symposium on Artificial Neural Networks, 2002

2000
Context-free and context-sensitive dynamics in recurrent neural networks.
Connect. Sci., 2000

Semantic systematicity and context in connectionist networks.
Connect. Sci., 2000

Evolving context-free language predictors.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

1997
Context-sensitive connectionist representations for nonmonotonic inheritance.
PhD thesis, 1997

1996
A Connectionist Variation of Inheritance.
Proceedings of the Artificial Neural Networks, 1996

1993
Editorial.
Artif. Intell. Rev., 1993


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