Mihaela Pertea

According to our database, Mihaela Pertea authored at least 13 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Investigating open reading frames in known and novel transcripts using ORFanage.

Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, Mihaela Pertea

Nat. Comput. Sci., 2023

2022

Improved transcriptome assembly using a hybrid of long and short reads with StringTie.

Alaina Shumate, Brandon M. Wong, Geo Pertea, Mihaela Pertea

PLoS Comput. Biol., 2022

2021

TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.

Ales Varabyou, Geo Pertea, Christopher Pockrandt, Mihaela Pertea

Bioinform., 2021

2011

Detection of Lineage-Specific Evolutionary Changes among Primate Species.

Mihaela Pertea, Geo Pertea, Steven L. Salzberg

BMC Bioinform., 2011

2009

OperonDB: a comprehensive database of predicted operons in microbial genomes.

Mihaela Pertea, Kunmi Ayanbule, Megan Smedinghoff, Steven L. Salzberg

Nucleic Acids Res., 2009

2008

Problems and Solutions in Biological Sequence Analysis, Mark Borodovsky, Svetlana Ekisheva.

Mihaela Pertea

Briefings Bioinform., 2008

2007

A computational survey of candidate exonic splicing enhancer motifs in the model plant <i>Arabidopsis thaliana</i>.

Mihaela Pertea, Stephen M. Mount, Steven L. Salzberg

BMC Bioinform., 2007

Using Protein Domains to Improve the Accuracy of <i>Ab Initio</i> Gene Finding.

Mihaela Pertea, Steven Salzberg

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2005

Efficient decoding algorithms for generalized hidden Markov model gene finders.

William H. Majoros, Mihaela Pertea, Arthur L. Delcher, Steven Salzberg

BMC Bioinform., 2005

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding.

William H. Majoros, Mihaela Pertea, Sihaela Salzberg

Bioinform., 2005

2004

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

William H. Majoros, Mihaela Pertea, Steven Salzberg

Bioinform., 2004

2003

GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders.

William H. Majoros, Mihaela Pertea, Corina Antonescu, Steven Salzberg

Nucleic Acids Res., 2003

2002

A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding.

Mihaela Pertea, Steven Salzberg

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002