Miguel Reboiro-Jato

Orcid: 0000-0001-8749-2703

According to our database1, Miguel Reboiro-Jato authored at least 53 papers between 2010 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
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PhD thesis 
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Links

Online presence:

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Bibliography

2024
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.
BMC Bioinform., December, 2024

Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.
J. Integr. Bioinform., 2024

2023
PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data.
Nucleic Acids Res., July, 2023

On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.
J. Integr. Bioinform., July, 2023

Auto-phylo: A Pipeline Maker for Phylogenetic Studies.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2023

2022
SEDA: A Desktop Tool Suite for FASTA Files Processing.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Real-time polyp detection model using convolutional neural networks.
Neural Comput. Appl., 2022

EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2022

2021
Compi: a framework for portable and reproducible pipelines.
PeerJ Comput. Sci., 2021

Deep Neural Networks approaches for detecting and classifying colorectal polyps.
Neurocomputing, 2021

DREIMT: a drug repositioning database and prioritization tool for immunomodulation.
Bioinform., 2021

The pegi3s Bioinformatics Docker Images Project.
Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2021

2020
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines.
Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.
Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

2019
Inferring Positive Selection in Large Viral Datasets.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

2018
S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data.
Comput. Methods Programs Biomed., 2018

EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

2017
Automated Collection and Sharing of Adaptive Amino Acid Changes Data.
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data.
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

2016
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data.
J. Cheminformatics, 2016

2015
Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.
BMC Bioinform., 2015

2014
A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification.
Int. J. Data Min. Bioinform., 2014

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification.
BMC Bioinform., 2014

Web scraping technologies in an API world.
Briefings Bioinform., 2014

A novel ensemble of classifiers that use biological relevant gene sets for microarray classification.
Appl. Soft Comput., 2014

2013
genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data.
Expert Syst. Appl., 2013

BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments.
Comput. Methods Programs Biomed., 2013

A Workflow for the Application of Biclustering to Mass Spectrometry Data.
Proceedings of the 7th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2013

2012
A JAVA application framework for scientific software development.
Softw. Pract. Exp., 2012

Grindstone4Spam: An optimization toolkit for boosting e-mail classification.
J. Syst. Softw., 2012

ADOPS - Automatic Detection Of Positively Selected Sites.
J. Integr. Bioinform., 2012

A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets.
Int. J. Data Min. Bioinform., 2012

On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites.
Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies.
Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012

2011
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
Nucleic Acids Res., 2011

Rapid development of proteomic applications with the AIBench framework.
J. Integr. Bioinform., 2011

Evaluating the effect of unbalanced data in biomedical document classification.
J. Integr. Bioinform., 2011

Using inductive learning to assess compound feed production in cooperative poultry farms.
Expert Syst. Appl., 2011

PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
BMC Bioinform., 2011

Building Proteomics Applications with the AIBench Application Framework.
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents.
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

Assessing the Suitability of MeSH Ontology for Classifying Medline Documents.
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies.
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

2010
ALTER: program-oriented conversion of DNA and protein alignments.
Nucleic Acids Res., 2010

PathJam: a new service for integrating biological pathway information.
J. Integr. Bioinform., 2010

AIBench: A rapid application development framework for translational research in biomedicine.
Comput. Methods Programs Biomed., 2010

A robust algorithm for forming note complexes.
Inteligencia Artif., 2010

Multi-agent System for Mass Spectrometry Analysis.
Proceedings of the Trends in Practical Applications of Agents and Multiagent Systems, 2010

PathAgent: Multi-agent System for Updated Pathway Information Integration.
Proceedings of the Trends in Practical Applications of Agents and Multiagent Systems, 2010

A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets.
Proceedings of the Advances in Bioinformatics, 2010

An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets.
Proceedings of the Advances in Bioinformatics, 2010

Incorporating biological knowledge to microarray data classification through genomic data fusion.
Proceedings of the 13th Conference on Information Fusion, 2010


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