Michael Snyder

Orcid: 0000-0003-0784-7987

Affiliations:
  • Stanford University School of Medicine, Stanford, CA, USA
  • Yale University, Department of Molecular, Cellular and Developmental Biology, New Haven, CT, USA (former)


According to our database1, Michael Snyder authored at least 72 papers between 2000 and 2024.

Collaborative distances:

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Bibliography

2024
Correction: Digital health application integrating wearable data and behavioral patterns improves metabolic health.
npj Digit. Medicine, 2024

PRS-Net: Interpretable Polygenic Risk Scores via Geometric Learning.
Proceedings of the Research in Computational Molecular Biology, 2024

2023
Biomonitoring and precision health in deep space supported by artificial intelligence.
Nat. Mac. Intell., March, 2023

Biological research and self-driving labs in deep space supported by artificial intelligence.
Nat. Mac. Intell., March, 2023

Digital health application integrating wearable data and behavioral patterns improves metabolic health.
npj Digit. Medicine, 2023

Semi-supervised Cooperative Learning for Multiomics Data Fusion.
Proceedings of the Machine Learning for Multimodal Healthcare Data, 2023

Self-Supervised Learning to Improve Topology-Optimized Axon Segmentation and Centerline Detection.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

CliniDigest: A Case Study in Large Language Model Based Large-Scale Summarization of Clinical Trial Descriptions.
Proceedings of the 2023 ACM Conference on Information Technology for Social Good, 2023

2022
Early prediction and longitudinal modeling of preeclampsia from multiomics.
Patterns, 2022

A method for intelligent allocation of diagnostic testing by leveraging data from commercial wearable devices: a case study on COVID-19.
npj Digit. Medicine, 2022

massDatabase: utilities for the operation of the public compound and pathway database.
Bioinform., 2022

metID: an R package for automatable compound annotation for LC-MS-based data.
Bioinform., 2022

Robust identification of temporal biomarkers in longitudinal omics studies.
Bioinform., 2022

Deep learning-based pseudo-mass spectrometry imaging analysis for precision medicine.
Briefings Bioinform., 2022

Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets.
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022

2021
Swarm: A federated cloud framework for large-scale variant analysis.
PLoS Comput. Biol., 2021

iNetModels 2.0: an interactive visualization and database of multi-omics data.
Nucleic Acids Res., 2021

Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs.
CoRR, 2021

Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health.
CoRR, 2021

Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays.
BMC Bioinform., 2021

AdaTiSS: a novel data-Adaptive robust method for identifying Tissue Specificity Scores.
Bioinform., 2021

RobNorm: model-based robust normalization method for labeled quantitative mass spectrometry proteomics data.
Bioinform., 2021

Hummingbird: efficient performance prediction for executing genomic applications in the cloud.
Bioinform., 2021

Heart Rate and CGM Feature Representation Diabetes Detection From Heart Rate: Learning Joint Features of Heart Rate and Continuous Glucose Monitors Yields Better Representations.
IEEE Access, 2021

Predictive Signatures for Lung Adenocarcinoma Prognostic Trajectory by Multiomics Data Integration and Ensemble Learning.
Proceedings of the Mathematical and Computational Oncology - Third International Symposium, 2021

Learning Personal Food Preferences via Food Logs Embedding.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks.
J. Am. Medical Informatics Assoc., 2020

Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment.
Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

2019
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.
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Nat., 2019

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.
Bioinform., 2019

Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks.
Proceedings of the AMIA 2019, 2019

2018
Fast Metagenomic Binning via Hashing and Bayesian Clustering.
J. Comput. Biol., 2018

Omics AnalySIs System for PRecision Oncology (OASISPRO): a web-based omics analysis tool for clinical phenotype prediction.
Bioinform., 2018

Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology.
Proceedings of the AMIA 2018, 2018

2017
Cloud-based interactive analytics for terabytes of genomic variants data.
Bioinform., 2017

GATTACA: Lightweight Metagenomic Binning Using Kmer Counting.
Proceedings of the Research in Computational Molecular Biology, 2017

Harnessing Big Data for Precision Medicine: Infrastructures and Applications.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Consumer Wearable Devices for Health Surveillance and Disease Monitoring.
Proceedings of the Summit on Clinical Research Informatics, 2017

Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features.
Proceedings of the AMIA 2017, 2017

2016
Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.
BMC Bioinform., 2016

Genome assembly from synthetic long read clouds.
Bioinform., 2016

Invited Talks at the AAAI Symposium on Well-Being Computing.
Proceedings of the 2016 AAAI Spring Symposia, 2016

2015
Mango: a bias-correcting ChIA-PET analysis pipeline.
Bioinform., 2015

2014
Topologically associating domains are stable units of replication-timing regulation Open.
Nat., 2014

Comparative analysis of regulatory information and circuits across distant species Open.
Nat., 2014

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.
Bioinform., 2014

PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements.
Tiny Trans. Comput. Sci., 2013

Personal genomes, quantitative dynamic omics and personalized medicine.
Quant. Biol., 2013

Metadata Checklist for the Integrated Personal Omics Study: <i>Proteomics and Metabolomics Experiments</i>.
Big Data, 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data, 2013

2012
Copy Number Variation detection from 1000 Genomes project exon capture sequencing data.
BMC Bioinform., 2012

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.
Bioinform., 2012

Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011
Measuring the Evolutionary Rewiring of Biological Networks.
PLoS Comput. Biol., 2011

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.
PLoS Comput. Biol., 2011

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
Bioinform., 2011

2010
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains.
BMC Bioinform., 2010

2009
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants.
PLoS Comput. Biol., 2009

2008
Modeling ChIP Sequencing In Silico with Applications.
PLoS Comput. Biol., 2008

2006
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
Bioinform., 2006

Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research.
Proceedings of the 40th Annual Conference on Information Sciences and Systems, 2006

2005
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2005

2004
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search.
J. Comput. Biol., 2004

2003
ExpressYourself: a modular platform for processing and visualizing microarray data
Nucleic Acids Res., 2003

2002
The TRIPLES database: a community resource for yeast molecular biology.
Nucleic Acids Res., 2002

A dynamic approach to mapping coordinates between microplates and microarrays.
J. Biomed. Informatics, 2002


2001
An XML Application For Genomic Data Interoperation.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

A metadata framework for interoperating heterogeneous genome data using XML.
Proceedings of the AMIA 2001, 2001

2000
TRIPLES: a database of gene function in Saccharomyces cerevisiae.
Nucleic Acids Res., 2000

Graphically-enabled integration of bioinformatics tools allowing parallel execution.
Proceedings of the AMIA 2000, 2000


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