Michael L. Hines

Frontiers Neuroinformatics, 2022

2020

Fully-Asynchronous Fully-Implicit Variable-Order Variable-Timestep Simulation of Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the Computational Science - ICCS 2020, 2020

An Optimizing Multi-platform Source-to-source Compiler Framework for the NEURON MODeling Language.

[BibT_eX]

[DOI]

Proceedings of the Computational Science - ICCS 2020, 2020

2019

Asynchronous Branch-Parallel Simulation of Detailed Neuron Models.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2019

CoreNEURON : An Optimized Compute Engine for the NEURON Simulator.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2019

Exploiting Flow Graph of System of ODEs to Accelerate the Simulation of Biologically-Detailed Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

Fully-Asynchronous Cache-Efficient Simulation of Detailed Neural Networks.

[BibT_eX]

[DOI]

Mohammand Nazrul Ishlam Patoary

Proceedings of the Computational Science - ICCS 2019, 2019

2018

Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2018

Code Generation in Computational Neuroscience: A Review of Tools and Techniques.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2018

2017

Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.

[BibT_eX]

[DOI]

Zhongwei Lin

Carl Tropper

Robert A. McDougal

Yiping Yao

Mohammand Nazrul Ishlam Patoary

ACM Trans. Model. Comput. Simul., 2017

Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.

[BibT_eX]

[DOI]

J. Simulation, 2017

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

[BibT_eX]

[DOI]

J. Comput. Neurosci., 2017

2016

Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.

[BibT_eX]

[DOI]

Mohammand Nazrul Ishlam Patoary

Alexandra Seidenstein

Neural Comput., 2016

Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb.

[BibT_eX]

[DOI]

Frontiers Comput. Neurosci., 2016

Leveraging a Cluster-Booster Architecture for Brain-Scale Simulations.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing - 31st International Conference, 2016

2015

ModelView for ModelDB: Online Presentation of Model Structure.

[BibT_eX]

[DOI]

Neuroinformatics, 2015

Neuronal Calcium Wave Propagation Varies with Changes in Endoplasmic Reticulum Parameters: A Computer Model.

[BibT_eX]

[DOI]

Neural Comput., 2015

Python in neuroscience.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2015

Simulating Morphologically Detailed Neuronal Networks at Extreme Scale.

[BibT_eX]

[DOI]

Proceedings of the Parallel Computing: On the Road to Exascale, 2015

NTW-MT: a Multi-threaded Simulator for Reaction Diffusion Simulations in NEURON.

[BibT_eX]

[DOI]

Zhongwei Lin

Carl Tropper

Robert A. McDougal

Proceedings of the 3rd ACM Conference on SIGSIM-Principles of Advanced Discrete Simulation, London, United Kingdom, June 10, 2015

2014

SenseLab: Integration of Multidisciplinary Neuroscience Data.

[BibT_eX]

[DOI]

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

ModelDB.

[BibT_eX]

[DOI]

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Numerical Integration Methods.

[BibT_eX]

[DOI]

Ted Carnevale

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

NEURON Simulation Environment.

[BibT_eX]

[DOI]

Ted Carnevale

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb.

[BibT_eX]

[DOI]

Frontiers Comput. Neurosci., 2014

2013

Sparse Distributed Representation of Odors in a Large-scale Olfactory Bulb Circuit.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2013

Reaction-diffusion in the NEURON simulator.

[BibT_eX]

[DOI]

Robert A. McDougal

Frontiers Neuroinformatics, 2013

2012

Mitral cell spike synchrony modulated by dendrodendritic synapse location.

[BibT_eX]

[DOI]

Frontiers Comput. Neurosci., 2012

2011

Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer.

[BibT_eX]

[DOI]

Sameer Kumar

Frontiers Comput. Neurosci., 2011

2010

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2010

Optimization of applications with non-blocking neighborhood collectives via multisends on the Blue Gene/P supercomputer.

[BibT_eX]

[DOI]

Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2009

A component-based extension framework for large-scale parallel simulations in NEURON.

[BibT_eX]

[DOI]

Frontiers Neuroinformatics, 2009

NEURON and Python.

[BibT_eX]

[DOI]

Andrew P. Davison

Eilif B. Müller

Frontiers Neuroinformatics, 2009

2008

Just-in-Time Connectivity for Large Spiking Networks.

[BibT_eX]

[DOI]

Neural Comput., 2008

Fully implicit parallel simulation of single neurons.

[BibT_eX]

[DOI]

Henry Markram

J. Comput. Neurosci., 2008

Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors.

[BibT_eX]

[DOI]

Hubert Eichner

J. Comput. Neurosci., 2008

2007

Interoperability of Neuroscience Modeling Software: Current Status and Future Directions.

[BibT_eX]

[DOI]

Neuroinformatics, 2007

Simulation of networks of spiking neurons: A review of tools and strategies.

[BibT_eX]

[DOI]

J. Comput. Neurosci., 2007

2006

Parallel network simulations with NEURON.

[BibT_eX]

[DOI]

J. Comput. Neurosci., 2006

2005

Independent Variable Time-Step Integration of Individual Neurons for Network Simulations.

[BibT_eX]

[DOI]

Neural Comput., 2005

The Role of Distal Dendritic Gap Junctions in Synchronization of Mitral Cell Axonal Output.

[BibT_eX]

[DOI]

Michele Migliore

Gordon M. Shepherd

J. Comput. Neurosci., 2005

2004

Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation.

[BibT_eX]

[DOI]

Neuroinformatics, 2004

ModelDB: A Database to Support Computational Neuroscience.

[BibT_eX]

[DOI]

Thomas M. Morse

Michele Migliore

Gordon M. Shepherd

J. Comput. Neurosci., 2004

Discrete event simulation in the NEURON environment.

[BibT_eX]

[DOI]

Neurocomputing, 2004

2003

ModelDB - Making models publicly accessible to support computational neuroscience.

[BibT_eX]

[DOI]

Neuroinformatics, 2003

Towards effective and rewarding data sharing.

[BibT_eX]

[DOI]

Neuroinformatics, 2003

Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

2001

Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2001

NEOSIM: Portable large-scale plug and play modelling.

[BibT_eX]

[DOI]

Neurocomputing, 2001

2000

Expanding NEURON's Repertoire of Mechanisms with NMODL.

[BibT_eX]

[DOI]

Neural Comput., 2000

1998

Acquiring, Storing and Retrieving Diverse Biomedical Data Using the World-Wide-Web: The SenseLab Paradigm.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

1997

The NEURON Simulation Environment.

[BibT_eX]

[DOI]