Michael J. MacCoss

According to our database, Michael J. MacCoss authored at least 12 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The ProteomeXchange consortium at 10 years: 2023 update.

Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno

Nucleic Acids Res., January, 2023

2020

piNET: a versatile web platform for downstream analysis and visualization of proteomics data.

Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller

Nucleic Acids Res., 2020

The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno

Nucleic Acids Res., 2020

Ripple: A Practical Declarative Programming Framework for Serverless Compute.

Shannon Joyner, Michael J. MacCoss, Christina Delimitrou, Hakim Weatherspoon

CoRR, 2020

Audit logs to enforce document integrity in Skyline and Panorama.

Tobias Rohde, Rita Chupalov, Nicholas Shulman, Vagisha Sharma, Josh Eckels, Brian S. Pratt, Michael J. MacCoss, Brendan MacLean

Bioinform., 2020

2014

A framework for installable external tools in Skyline.

Daniel Broudy, Trevor Killeen, Meena Choi, Nicholas Shulman, Deepak R. Mani, Susan E. Abbatiello, Deepak Mani, Rushdy Ahmad, Alexandria K. Sahu, Birgit Schilling, Kaipo Tamura, Yuval Boss, Vagisha Sharma, Bradford W. Gibson, Steven A. Carr, Olga Vitek, Michael J. MacCoss, Brendan MacLean

Bioinform., 2014

2012

Computational and Statistical Analysis of Protein Mass Spectrometry Data.

William Stafford Noble, Michael J. MacCoss

PLoS Comput. Biol., 2012

Estimating relative abundances of proteins from shotgun proteomics data.

Sean McIlwain, Michael Mathews, Michael Bereman, Edwin W. Rubel, Michael J. MacCoss, William Stafford Noble

BMC Bioinform., 2012

2010

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L. Finney, Barbara Frewen, Randall Kern, David L. Tabb, Daniel C. Liebler, Michael J. MacCoss

Bioinform., 2010

2008

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.

Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.

Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble

Proceedings of the Research in Computational Molecular Biology, 2007

2005

Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra.

Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005