Michael Hackenberg

Orcid: 0000-0003-2248-3114

According to our database1, Michael Hackenberg authored at least 26 papers between 2004 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.
Nucleic Acids Res., July, 2023

isomiRdb: microRNA expression at isoform resolution.
Nucleic Acids Res., January, 2023

2022
MirGeneDB 2.1: toward a complete sampling of all major animal phyla.
Nucleic Acids Res., 2022

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Nucleic Acids Res., 2022

2020
MirGeneDB 2.0: the metazoan microRNA complement.
Nucleic Acids Res., 2020

mirnaQC: a webserver for comparative quality control of miRNA-seq data.
Nucleic Acids Res., 2020

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Bioinform., 2020

Applying Feature Selection to Improve Predictive Performance and Explainability in Lung Cancer Detection with Soft Computing.
Proceedings of the 53rd Hawaii International Conference on System Sciences, 2020

2019
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.
Nucleic Acids Res., 2019

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies.
Nucleic Acids Res., 2019

On the Need of Interpretability for Biomedical Applications: Using Fuzzy Models for Lung Cancer Prediction with Liquid Biopsy.
Proceedings of the 2019 IEEE International Conference on Fuzzy Systems, 2019

2017
NGSmethDB 2017: enhanced methylomes and differential methylation.
Nucleic Acids Res., 2017

Error Correction in Methylation Profiling From NGS Bisulfite Protocols.
Proceedings of the Algorithms for Next-Generation Sequencing Data, Techniques, 2017

2015
sRNAtoolbox: an integrated collection of small RNA research tools.
Nucleic Acids Res., 2015

2014
NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes.
Nucleic Acids Res., 2014

DNA clustering and genome complexity.
Comput. Biol. Chem., 2014

2013
Best practices for SNV and methylation calling from bisulfite sequencing data.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2011
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.
Nucleic Acids Res., 2011

NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data.
Nucleic Acids Res., 2011

WordCluster: detecting clusters of DNA words and genomic elements.
Algorithms Mol. Biol., 2011

2010
TargetSpy: a supervised machine learning approach for microRNA target prediction.
BMC Bioinform., 2010

2009
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res., 2009

ContDist: a tool for the analysis of quantitative gene and promoter properties.
BMC Bioinform., 2009

2008
Annotation-Modules: a tool for finding significant combinations of multisource annotations for gene lists.
Bioinform., 2008

2006
<i>CpGcluster</i>: a distance-based algorithm for CpG-island detection.
BMC Bioinform., 2006

2004
IsoFinder: computational prediction of isochores in genome sequences.
Nucleic Acids Res., 2004


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