Michael Gribskov

According to our database, Michael Gribskov authored at least 45 papers between 1984 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Bibliometric review of ATAC-Seq and its application in gene expression.

Liheng Luo, Michael Gribskov, Sufang Wang

Briefings Bioinform., 2022

2020

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.

Xiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan Holly Yang

PLoS Comput. Biol., 2020

2019

MicroRNA and lncRNA Databases and Analysis.

Xiangying Sun, Michael Gribskov

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Identification of Sequence Patterns, Motifs and Domains.

Michael Gribskov

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

MiPepid: MicroPeptide identification tool using machine learning.

Mengmeng Zhu, Michael Gribskov

BMC Bioinform., 2019

IRESpy: an XGBoost model for prediction of internal ribosome entry sites.

Junhui Wang, Michael Gribskov

BMC Bioinform., 2019

2018

COACT: a query interface language for collaborative databases.

Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref, Deo Prakash

Distributed Parallel Databases, 2018

AUDIT: approving and tracking updates with dependencies in collaborative databases.

Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref

Distributed Parallel Databases, 2018

2017

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.

Sufang Wang, Michael Gribskov

Bioinform., 2017

DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates.

Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov, Yuan Qi

Bioinform., 2017

AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs.

Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov

Bioinform., 2017

Advancing the Representation of Women in HPC at Purdue University.

Gladys K. Andino, Marisa Brazil, Michael Gribskov, Preston M. Smith

Proceedings of the Practice and Experience in Advanced Research Computing 2017: Sustainability, 2017

2016

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data.

Sufang Wang, Michael Gribskov, Tony R. Hazbun, Pete E. Pascuzzi

Bioinform., 2016

2015

GenoBase: comprehensive resource database of <i>Escherichia coli</i> K-12.

Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori

Nucleic Acids Res., 2015

Differential flux balance analysis of quantitative proteomic data on protein interaction networks.

Biaobin Jiang, David F. Gleich, Michael Gribskov

Proceedings of the 2015 IEEE Global Conference on Signal and Information Processing, 2015

MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling.

Muyi Liu, Michael Gribskov

Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera).

Gladys K. Andino, Michael Gribskov, Greg J. Hunt, Denis Anderson, Jay D. Evans

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2008

Bioinformatics research in the Asia Pacific: a 2007 update.

Shoba Ranganathan, Michael Gribskov, Tin Wee Tan

BMC Bioinform., 2008

Pattern Matching in RNA Structures.

Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov

Proceedings of the Bioinformatics Research and Applications, 2008

2006

Wiggle - Predicting Functionally Flexible Regions from Primary Sequence.

Jenny Gu, Michael Gribskov, Philip E. Bourne

PLoS Comput. Biol., 2006

Establishing bioinformatics research in the Asia Pacific.

Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan

BMC Bioinform., 2006

2005

The ISCB: Growing and Evolving in Step with Science.

Michael Gribskov

PLoS Comput. Biol., 2005

An Open Forum for Computational Biology.

Michael Gribskov

PLoS Comput. Biol., 2005

2004

A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing.

Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu

Proceedings of the Biocomputing 2004, 2004

2003

Challenges in Data Management for Functional Genomics.

Michael Gribskov

OMICS, 2003

The PlantsP and PlantsT Functional Genomics Databases.

Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov

Nucleic Acids Res., 2003

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores.

Timothy L. Bailey, Michael Gribskov

J. Comput. Biol., 2003

a program for automatic generation of database interfaces .

Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov

Comput. Biol. Chem., 2003

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data.

T. Murlidharan Nair, Christina L. Zheng, J. Lynn Fink, Robert O. Stuart, Michael Gribskov

Comput. Biol. Chem., 2003

2HAPI: A Microarray Data Analysis System.

J. Lynn Fink, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil, Michael Gribskov

Bioinform., 2003

2002

Homophila: human disease gene cognates in Drosophila.

Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov

Nucleic Acids Res., 2002

2001

PlantsP: a functional genomics database for plant phosphorylation.

Michael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, Guangfa Zhang

Nucleic Acids Res., 2001

Use of keyword hierarchies to interpret gene expression patterns.

Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil

Bioinform., 2001

2000

ISMB-2000: Bioinformatics enters a new millennium.

Philip E. Bourne, Michael Gribskov

Bioinform., 2000

Concerning the accuracy of MAST E-values.

Timothy L. Bailey, Michael Gribskov

Bioinform., 2000

1998

Methods and Statistics for Combining Motif Match Scores.

Timothy L. Bailey, Michael Gribskov

J. Comput. Biol., 1998

Combining evidence using p-values: application to sequence homology searches.

Timothy L. Bailey, Michael Gribskov

Bioinform., 1998

1997

Score Distributions for Simultaneous Matching to Multiple Motifs.

Timothy L. Bailey, Michael Gribskov

J. Comput. Biol., 1997

1996

Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching.

Michael Gribskov, Nina L. Robinson

Comput. Chem., 1996

The Megaprior Heuristic for Discovering Protein Sequence Patterns.

Timothy L. Bailey, Michael Gribskov

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1993

A Mechanistic View of Proteins and Their Sequences.

Michael Gribskov

Comput. Chem., 1993

1992

The Language Metaphor in Sequence Analysis.

Michael Gribskov

Comput. Chem., 1992

1988

Profile scanning for three-dimensional structural patterns in protein sequences.

Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg

Comput. Appl. Biosci., 1988

1986

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package.

Michael Gribskov, Richard R. Burgess, J. Devereux

Nucleic Acids Res., 1986

1984

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.

Michael Gribskov, J. Devereux, Richard R. Burgess

Nucleic Acids Res., 1984