Michael F. Ochs

According to our database¹, Michael F. Ochs authored at least 31 papers between 2002 and 2018.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of four.

Timeline

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In proceedings

Article

PhD thesis

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Links

On csauthors.net:

Bibliography

2018

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.

[BibT_eX]

[DOI]

Genevieve L. Stein-O'Brien

Bioinform., 2018

2017

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

[BibT_eX]

[DOI]

Genevieve L. Stein-O'Brien

Bioinform., 2017

2015

AGA: Interactive pipeline for reproducible genomics analyses.

[BibT_eX]

[DOI]

F1000Research, 2015

The estimation of dimensionality in gene expression data using Nonnegative Matrix Factorization.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Outlier Analysis and Top Scoring Pairfor Integrated Data Analysisand Biomarker Discovery.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

2013

Session Introduction.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity.

[BibT_eX]

[DOI]

Proceedings of the Pattern Recognition in Bioinformatics, 2013

2012

Updating annotations with the distributed annotation system and the automated sequence annotation pipeline.

[BibT_eX]

[DOI]

William Speier

Michael F. Ochs

Bioinform., 2012

Session Introduction.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Matrix factorization for transcriptional regulatory network inference.

[BibT_eX]

[DOI]

Michael F. Ochs

Elana J. Fertig

Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

Identifying context-specific transcription factor targets from prior knowledge and gene expression data.

[BibT_eX]

[DOI]

Elana J. Fertig

Alexander V. Favorov

Michael F. Ochs

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011

A Comprehensive Statistical Model for Cell Signaling.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Workshop Introduction.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Cancer Systems Biology.

[BibT_eX]

[DOI]

Elana J. Fertig

Ludmila V. Danilova

Michael F. Ochs

Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010

Matrix factorisation methods applied in microarray data analysis.

[BibT_eX]

[DOI]

Andrew V. Kossenkov

Michael F. Ochs

Int. J. Data Min. Bioinform., 2010

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.

[BibT_eX]

[DOI]

Bioinform., 2010

Knowledge-based data analysis comes of age.

[BibT_eX]

[DOI]

Michael F. Ochs

Briefings Bioinform., 2010

2009

Session Introduction.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Session Introduction.

[BibT_eX]

[DOI]

Michael F. Ochs

John Quackenbush

Ramana Davuluri

Proceedings of the Biocomputing 2008, 2008

2007

Determining Transcription Factor Activity from Microarray Data using Bayesian Markov Chain Monte Carlo Sampling.

[BibT_eX]

[DOI]

Andrew V. Kossenkov

Aidan J. Peterson

Michael F. Ochs

Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

2006

WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2006

LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates.

[BibT_eX]

[DOI]

Guoli Wang

Andrew V. Kossenkov

Michael F. Ochs

BMC Bioinform., 2006

Determination of strongly overlapping signaling activity from microarray data.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

Proteomics LIMS: A caBIG™ Project, Year 1.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

2005

Bayesian image decomposition applied to relaxographic imaging.

[BibT_eX]

[DOI]

Charles S. Springer Jr.

Int. J. Imaging Syst. Technol., 2005

2004

FGDP: functional genomics data pipeline for automated, multiple microarray data analyses.

[BibT_eX]

[DOI]

Bioinform., 2004

ClutrFree: cluster tree visualization and interpretation.

[BibT_eX]

[DOI]

Ghislain Bidaut

Michael F. Ochs

Bioinform., 2004

2003

ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.

[BibT_eX]

[DOI]

Bioinform., 2003

Analysis of Phylogenetic Profiles Using Bayesian Decomposition.

[BibT_eX]

[DOI]

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002

Application of Bayesian Decomposition for analysing microarray data.

[BibT_eX]

[DOI]

Bioinform., 2002

BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.

[BibT_eX]

[DOI]

Jeffrey D. Grant

Roland L. Dunbrack Jr.

Frank J. Manion

Michael F. Ochs

Bioinform., 2002

Michael F. Ochs

Timeline

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On csauthors.net:

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