Michael Considine

According to our database, Michael Considine authored at least 8 papers between 2000 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.

Thomas Sherman, Luciane T. Kagohara, Raymon Cao, Raymond Cheng, Matthew Satriano, Michael Considine, Gabriel Krigsfeld, Ruchira Ranaweera, Yong Tang, Sandra A. Jablonski, Genevieve L. Stein-O'Brien, Daria A. Gaykalova, Louis M. Weiner, Christine H. Chung, Elana J. Fertig

PLoS Comput. Biol., 2019

2018

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.

Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig

Bioinform., 2018

2017

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

Genevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig

Bioinform., 2017

2015

AGA: Interactive pipeline for reproducible genomics analyses.

Michael Considine, Hilary S. Parker, Yingying Wei, Xaio Xia, Leslie Cope, Michael F. Ochs, Elana J. Fertig

F1000Research, 2015

2014

Outlier Analysis and Top Scoring Pairfor Integrated Data Analysisand Biomarker Discovery.

Michael F. Ochs, Jason E. Farrar, Michael Considine, Yingying Wei, Soheil Meshinchi, Robert J. Arceci

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.

Hilary S. Parker, Jeffrey T. Leek, Alexander V. Favorov, Michael Considine, Xiaoxin Xia, Sameer Chavan, Christine H. Chung, Elana J. Fertig

Bioinform., 2014

2013

Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity.

Michael F. Ochs, Jason E. Farrar, Michael Considine, Yingying Wei, Soheil Meschinchi, Robert J. Arceci

Proceedings of the Pattern Recognition in Bioinformatics, 2013

2000

The effect of task conditions on the comprehensibility of synthetic speech.

Jennifer Lai, David Wood, Michael Considine

Proceedings of the CHI 2000 Conference on Human factors in computing systems, 2000