Identification of mixups among DNA sequencing plates. - Nikola Stojanovic; Jean L. Chang; Jessica Lehoczky; Michael C. Zody; Ken Dewar (Bioinform., 2002)

Identifying novel constrained elements by exploiting biased substitution patterns. - Manuel Garber; Mitchell Guttman; Michele E. Clamp; Michael C. Zody; Nir Friedman; Xiaohui Xie (Bioinform., 2009)

Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data. - Alexander R. Macalalad; Michael C. Zody; Patrick Charlebois; Niall J. Lennon; Ruchi M. Newman; Christine M. Malboeuf; Elizabeth M. Ryan; Christian L. Boutwell; Karen A. Power; Doug E. Brackney; Kendra N. Pesko; Joshua Z. Levin; et al. (PLoS Comput. Biol., 2012)

Conpair: concordance and contamination estimator for matched tumor-normal pairs. - Ewa A. Bergmann; Bo-Juen Chen; Kanika Arora; Vladimir Vacic; Michael C. Zody (Bioinform., 2016)

Somatic variant analysis of linked-reads sequencing data with Lancet. - Rajeeva Musunuri; Kanika Arora; André Corvelo; Minita Shah; Jennifer Shelton; Michael C. Zody; Giuseppe Narzisi (Bioinform., 2021)