Michael C. Schatz

According to our database, Michael C. Schatz authored at least 25 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

MEM-Based Pangenome Indexing for k-mer Queries.

Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

Proceedings of the 24th International Workshop on Algorithms in Bioinformatics, 2024

2023

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy.

Aysam Guerler, Dannon Baker, Marius van den Beek, Björn A. Grüning, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko

BMC Bioinform., December, 2023

2022

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs

Nucleic Acids Res., 2022

Diversifying the Genomic Data Science Research Community.

Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie

CoRR, 2022

Sketching and sampling approaches for fast and accurate long read classification.

Arun Das, Michael C. Schatz

BMC Bioinform., 2022

2021

Ribbon: intuitive visualization for complex genomic variation.

Maria Nattestad, Robert Aboukhalil, Chen-Shan Chin, Michael C. Schatz

Bioinform., 2021

Sapling: accelerating suffix array queries with learned data models.

Melanie Kirsche, Arun Das, Michael C. Schatz

Bioinform., 2021

2020

Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants.

Ruibang Luo, Tak Wah Lam, Michael C. Schatz

Int. J. Comput. Biol. Drug Des., 2020

Vargas: heuristic-free alignment for assessing linear and graph read aligners.

Charlotte A. Darby, Ravi Gaddipati, Michael C. Schatz, Ben Langmead

Bioinform., 2020

2019

Recovering rearranged cancer chromosomes from karyotype graphs.

Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz

BMC Bioinform., 2019

2017

GenomeScope: fast reference-free genome profiling from short reads.

Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad, Charles J. Underwood, Han Fang, James Gurtowski, Michael C. Schatz

Bioinform., 2017

2016

Assemblytics: a web analytics tool for the detection of variants from an assembly.

Maria Nattestad, Michael C. Schatz

Bioinform., 2016

NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads.

Mohammad Ruhul Amin, Steven Skiena, Michael C. Schatz

Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2014

The contribution of <i>de novo</i> coding mutations to autism spectrum disorder.

Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler

Nat., 2014

Answering the demands of digital genomics.

Matthew A. Titmus, James Gurtowski, Michael C. Schatz

Concurr. Comput. Pract. Exp., 2014

SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips.

Shoshana Marcus, Hayan Lee, Michael C. Schatz

Bioinform., 2014

Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight.

Philip D. Blood, Shoshana Marcus, Michael C. Schatz

Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

On Algorithmic Complexity of Biomolecular Sequence Assembly Problem.

Giuseppe Narzisi, Bud Mishra, Michael C. Schatz

Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.

Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop

Briefings Bioinform., 2013

2012

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.

Hayan Lee, Michael C. Schatz

Bioinform., 2012

2010

Assembly complexity of prokaryotic genomes using short reads.

Carl Kingsford, Michael C. Schatz, Mihai Pop

BMC Bioinform., 2010

2009

Optimizing data intensive GPGPU computations for DNA sequence alignment.

Cole Trapnell, Michael C. Schatz

Parallel Comput., 2009

Revealing Biological Modules via Graph Summarization.

Saket Navlakha, Michael C. Schatz, Carl Kingsford

J. Comput. Biol., 2009

CloudBurst: highly sensitive read mapping with MapReduce.

Michael C. Schatz

Bioinform., 2009

2007

High-throughput sequence alignment using Graphics Processing Units.

Michael C. Schatz, Cole Trapnell, Arthur L. Delcher, Amitabh Varshney

BMC Bioinform., 2007