Michael Baumgartner

According to our database, Michael Baumgartner authored at least 25 papers between 2019 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Decoupling Semantic Similarity from Spatial Alignment for Neural Networks.

Tassilo Wald, Constantin Ulrich, Gregor Köhler, David Zimmerer, Stefan Denner, Michael Baumgartner, Fabian Isensee, Priyank Jaini, Klaus H. Maier-Hein

CoRR, 2024

Overcoming Common Flaws in the Evaluation of Selective Classification Systems.

Jeremias Traub, Till J. Bungert, Carsten T. Lüth, Michael Baumgartner, Klaus H. Maier-Hein, Lena Maier-Hein, Paul F. Jaeger

CoRR, 2024

Mitigating False Predictions in Unreasonable Body Regions.

Constantin Ulrich, Catherine Knobloch, Julius Holzschuh, Tassilo Wald, Maximilian R. Rokuss, Maximilian Zenk, Maximilian Fischer, Michael Baumgartner, Fabian Isensee, Klaus H. Maier-Hein

Proceedings of the Machine Learning in Medical Imaging - 15th International Workshop, 2024

nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentation.

Fabian Isensee, Tassilo Wald, Constantin Ulrich, Michael Baumgartner, Saikat Roy, Klaus H. Maier-Hein, Paul F. Jäger

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Abstract: Multi-dataset Approach to Medical Image Segmentation - MultiTalent.

Constantin Ulrich, Fabian Isensee, Tassilo Wald, Maximilian Zenk, Michael Baumgartner, Klaus H. Maier-Hein

Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

Abstract: 3D Medical Image Segmentation with Transformer-based Scaling of ConvNets - MedNeXt.

Saikat Roy, Gregor Köhler, Michael Baumgartner, Constantin Ulrich, Fabian Isensee, Paul F. Jaeger, Klaus H. Maier-Hein

Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

Abstract: Anatomy-informed Data Augmentation for Enhanced Prostate Cancer Detection.

Balint Kovacs, Nils Netzer, Michael Baumgartner, Carolin Eith, Dimitrios Bounias, Clara Meinzer, Paul F. Jäger, Kevin S. Zhang, Ralf Floca, Adrian Schrader, Fabian Isensee, Regula Gnirs, Magdalena Görtz, Viktoria Schütz, Albrecht Stenzinger, Markus Hohenfellner, Heinz-Peter Schlemmer, Ivo Wolf, David Bonekamp, Klaus H. Maier-Hein

Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

Abstract: Deep Learning-based Detection of Vessel Occlusions on CT-Angiography in Patients with Suspected Acute Ischemic Stroke.

Gianluca Brugnara, Michael Baumgartner, Edwin D. Scholze, Katerina Deike-Hofmann, Klaus Kades, Jonas Scherer, Stefan Denner, Hagen Meredig, Aditya Rastogi, Mustafa A. Mahmutoglu, Christian Ulfert, Ulf Neuberger, Silvia Schönenberger, Kai Schlamp, Zeynep Bendella, Thomas Pinetz, Carsten Schmeel, Wolfgang Wick, Peter A. Ringleb, Ralf Floca, Markus Möhlenbruch, Alexander Radbruch, Martin Bendszus, Klaus H. Maier-Hein, Philipp Vollmuth

Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

Abstract: Object Detection for Breast Diffusion-weighted Imaging.

Dimitrios Bounias, Michael Baumgartner, Peter Neher, Balint Kovacs, Ralf Floca, Paul F. Jaeger, Lorenz A. Kapsner, Jessica Eberle, Dominique Hadler, Frederik B. Laun, Sabine Ohlmeyer, Klaus H. Maier-Hein, Sebastian Bickelhaupt

Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

2023

Exploring new ways: Enforcing representational dissimilarity to learn new features and reduce error consistency.

Tassilo Wald, Constantin Ulrich, Fabian Isensee, David Zimmerer, Gregor Köhler, Michael Baumgartner, Klaus H. Maier-Hein

CoRR, 2023

Transformer Utilization in Medical Image Segmentation Networks.

Saikat Roy, Gregor Köhler, Michael Baumgartner, Constantin Ulrich, Jens Petersen, Fabian Isensee, Klaus H. Maier-Hein

CoRR, 2023

Understanding metric-related pitfalls in image analysis validation.

Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

CoRR, 2023

MultiTalent: A Multi-dataset Approach to Medical Image Segmentation.

Constantin Ulrich, Fabian Isensee, Tassilo Wald, Maximilian Zenk, Michael Baumgartner, Klaus H. Maier-Hein

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

MedNeXt: Transformer-Driven Scaling of ConvNets for Medical Image Segmentation.

Saikat Roy, Gregor Köhler, Constantin Ulrich, Michael Baumgartner, Jens Petersen, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Anatomy-Informed Data Augmentation for Enhanced Prostate Cancer Detection.

Balint Kovacs, Nils Netzer, Michael Baumgartner, Carolin Eith, Dimitrios Bounias, Clara Meinzer, Paul F. Jäger, Kevin S. Zhang, Ralf Floca, Adrian Schrader, Fabian Isensee, Regula Gnirs, Magdalena Goertz, Viktoria Schuetz, Albrecht Stenzinger, Markus Hohenfellner, Heinz-Peter Schlemmer, Ivo Wolf, David Bonekamp, Klaus H. Maier-Hein

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Taming Detection Transformers for Medical Object Detection.

Marc K. Ickler, Michael Baumgartner, Saikat Roy, Tassilo Wald, Klaus H. Maier-Hein

Proceedings of the Bildverarbeitung für die Medizin 2023, 2023

2022

MONAI: An open-source framework for deep learning in healthcare.

M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sébastien Ourselin, Andrew Feng

CoRR, 2022

Metrics reloaded: Pitfalls and recommendations for image analysis validation.

Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger

CoRR, 2022

Accurate Detection of Mediastinal Lesions with nnDetection.

Michael Baumgartner, Peter M. Full, Klaus H. Maier-Hein

Proceedings of the Lesion Segmentation in Surgical and Diagnostic Applications, 2022

Heterogeneous Model Ensemble For Automatic Polyp Detection and Tracking In Colonoscopy.

Amine Yamlahi, Patrick Godau, Thuy Nuong Tran, Lucas-Raphael Muller, Tim Adler, Minu Tizabi, Michael Baumgartner, Paul Jäger, Lena Maier-Hein

Proceedings of the 4th International Workshop and Challenge on Computer Vision in Endoscopy (EndoCV 2022) co-located with the 19th IEEE International Symposium on Biomedical Imaging (ISBI 2022), 2022

Abstract: nnDetection - A Self-configuring Method for Medical Object Detection.

Michael Baumgartner, Paul F. Jäger, Fabian Isensee, Klaus H. Maier-Hein

Proceedings of the Bildverarbeitung für die Medizin 2022, 2022

2021

Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge.

Kimberley M. Timmins, Irene C. van der Schaaf, Edwin Bennink, Ynte M. Ruigrok, Xingle An, Michael Baumgartner, Pascal Bourdon, Riccardo de Feo, Tommaso Di Noto, Florian Dubost, Augusto Fava-Sanches, Xue Feng, Corentin Giroud, Inteneural Group, Minghui Hu, Paul F. Jaeger, Juhana Kaiponen, Michal Klimont, Yuexiang Li, Hongwei Li, Yi Lin, Timo Loehr, Jun Ma, Klaus H. Maier-Hein, Guillaume Marie, Bjoern H. Menze, Jonas Richiardi, Saifeddine Rjiba, Dhaval Shah, Suprosanna Shit, Jussi Tohka, Thierry Urruty, Urszula Walinska, Xiaoping Yang, Yunqiao Yang, Yin Yin, Birgitta K. Velthuis, Hugo J. Kuijf

NeuroImage, 2021

nnDetection: A Self-configuring Method for Medical Object Detection.

Michael Baumgartner, Paul F. Jäger, Fabian Isensee, Klaus H. Maier-Hein

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

2019

Delira: A High-Level Framework for Deep Learning in Medical Image Analysis.

Christoph Haarburger, Justus Schock, Michael Baumgartner, Oliver Rippel, Dorit Merhof

J. Open Source Softw., 2019

Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification.

Christoph Haarburger, Michael Baumgartner, Daniel Truhn, Mirjam Broeckmann, Hannah Schneider, Simone Schrading, Christiane Kuhl, Dorit Merhof

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019