Michael B. Mundy

According to our database, Michael B. Mundy authored at least 10 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum).

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

2018

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions.

Brendan King, Terry Farrah, Matthew A. Richards, Michael B. Mundy, Evangelos Simeonidis, Nathan D. Price

Bioinform., 2018

2017

Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models.

Michael B. Mundy, Helena Mendes-Soares, Nicholas Chia

Bioinform., 2017

2016

MMinte: an application for predicting metabolic interactions among the microbial species in a community.

Helena Mendes-Soares, Michael B. Mundy, Luis Mendes Soares, Nicholas Chia

BMC Bioinform., 2016

2014

Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models.

Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price

PLoS Comput. Biol., 2014

2007

The Blue Gene/L Supercomputer: A Hardware and Software Story.

José E. Moreira, Valentina Salapura, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, Randy Bickford, Matthias A. Blumrich, José R. Brunheroto, Arthur A. Bright, Michael Brutman, José G. Castaños, Dong Chen, Paul Coteus, Paul Crumley, Sam Ellis, Thomas Engelsiepen, Alan Gara, Mark Giampapa, Tom Gooding, Shawn Hall, Ruud A. Haring, Roger L. Haskin, Philip Heidelberger, Dirk Hoenicke, Todd Inglett, Gerard V. Kopcsay, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Michael B. Mundy, Martin Ohmacht, Jeff Parker, Rick A. Rand, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Gordon G. Stewart, Todd Takken, Pavlos Vranas, Brian P. Wallenfelt, Michael Blocksome, Joe Ratterman

Int. J. Parallel Program., 2007

2006

Blue Gene system software - Designing a highly-scalable operating system: the Blue Gene/L story.

José E. Moreira, Michael Brutman, José G. Castaños, Thomas Engelsiepen, Mark Giampapa, Tom Gooding, Roger L. Haskin, Todd Inglett, Derek Lieber, Patrick McCarthy, Michael B. Mundy, Jeff Parker, Brian P. Wallenfelt

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer.

Michael Blocksome, Charles Archer, Todd Inglett, Patrick McCarthy, Michael B. Mundy, Joe Ratterman, A. Sidelnik, Brian E. Smith, George Almási, José G. Castaños, Derek Lieber, José E. Moreira, Sriram Krishnamoorthy, Vinod Tipparaju, Jarek Nieplocha

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

2005

Blue Gene/L programming and operating environment.

José E. Moreira, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, José R. Brunheroto, Michael Brutman, José G. Castaños, Paul Crumley, Manish Gupta, Todd Inglett, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Mark P. Mendell, Michael B. Mundy, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Greg G. Stewart

IBM J. Res. Dev., 2005