Melissa J. Davis

According to our database, Melissa J. Davis authored at least 20 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis.

Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis

BMC Bioinform., December, 2024

2023

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.

Ahmed Mohamed, Dharmesh D. Bhuva, Sam Lee, Ning Liu, Chin Wee Tan, Melissa J. Davis

Nucleic Acids Res., July, 2023

Sequence Representations and Their Utility for Predicting Protein-Protein Interactions.

Dhananjay Kimothi, Pravesh Biyani, James M. Hogan, Melissa J. Davis

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT.

Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor

BMC Bioinform., 2022

2020

Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts.

Aparna Elangovan, Melissa J. Davis, Karin Verspoor

CoRR, 2020

2018

Single sample scoring of molecular phenotypes.

Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis

BMC Bioinform., 2018

2015

RaftProt: mammalian lipid raft proteome database.

Anup Shah, David Chen, Akash R. Boda, Leonard J. Foster, Melissa J. Davis, Michelle M. Hill

Nucleic Acids Res., 2015

2014

Supervised, semi-supervised and unsupervised inference of gene regulatory networks.

Stefan Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis, Mark A. Ragan

Briefings Bioinform., 2014

Extracting reaction networks from databases-opening Pandora's box.

Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen

Briefings Bioinform., 2014

2013

RMaNI: Regulatory Module Network Inference framework.

Piyush B. Madhamshettiwar, Stefan Maetschke, Melissa J. Davis, Mark A. Ragan

BMC Bioinform., 2013

2012

mCOPA: analysis of heterogeneous features in cancer expression data.

Chenwei Wang, Alperen Taciroglu, Stefan Maetschke, Colleen C. Nelson, Mark A. Ragan, Melissa J. Davis

J. Clin. Bioinform., 2012

Mapping the stabilome: a novel computational method for classifying metabolic protein stability.

Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén

BMC Syst. Biol., 2012

Gene Ontology-driven inference of protein-protein interactions using inducers.

Stefan Maetschke, Martin Simonsen, Melissa J. Davis, Mark A. Ragan

Bioinform., 2012

Visualising associations between paired 'omics' data sets.

Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean

BioData Min., 2012

2010

A Semantic Web Ontology for Small Molecules and Their Biological Targets.

Joo-Young Choi, Melissa J. Davis, Andrew F. Newman, Mark A. Ragan

J. Chem. Inf. Model., 2010

Automatic, context-specific generation of Gene Ontology slims.

Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan

BMC Bioinform., 2010

2009

Protein-protein interaction as a predictor of subcellular location.

Chang Shin, Simon Wong, Melissa J. Davis, Mark A. Ragan

BMC Syst. Biol., 2009

2008

Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions.

Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan

Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2006

LOCATE: a mouse protein subcellular localization database.

J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale

Nucleic Acids Res., 2006

MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization.

Melissa J. Davis, Fasheng Zhang, Zheng Yuan, Rohan D. Teasdale

Silico Biol., 2006