Mélanie Courtot

According to our database, Mélanie Courtot authored at least 30 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Features of a FAIR vocabulary.

Fuqi Xu, Nick S. Juty, Carole A. Goble, Simon Jupp, Helen E. Parkinson, Mélanie Courtot

J. Biomed. Semant., December, 2023

2022

BioSamples database: FAIRer samples metadata to accelerate research data management.

Mélanie Courtot, Dipayan Gupta, Isuru Udara Liyanage, Fuqi Xu, Tony Burdett

Nucleic Acids Res., 2022

ELIXIR biovalidator for semantic validation of life science metadata.

Isuru Udara Liyanage, Tony Burdett, Bert Droesbeke, Karoly Erdos, Rolando Fernandez, Alasdair J. G. Gray, Muhammad Haseeb, Simon Jupp, Flavia Penim, Cyril Pommier, Philippe Rocca-Serra, Mélanie Courtot, Frederik Coppens

Bioinform., 2022

2021

The European Nucleotide Archive in 2020.

Peter W. Harrison, Alisha Ahamed, Raheela Aslam, Blaise T. F. Alako, Josephine Burgin, Nicola Buso, Mélanie Courtot, Jun Fan, Dipayan Gupta, Muhammad Haseeb, Sam Holt, Talal Ibrahim, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Rodrigo Lopez, Simon Kay, Rasko Leinonen, Xin Liu, Colman O'Cathail, Amir Pakseresht, Young Mi Park, Stephane Pesant, Nadim Rahman, Jeena Rajan, Alexey Sokolov, Senthilnathan Vijayaraja, Zahra Waheed, Ahmad Zyoud, Tony Burdett, Guy Cochrane

Nucleic Acids Res., 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters

Database J. Biol. Databases Curation, 2021

2020

FAIR Principles: Interpretations and Implementation Considerations.

Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes

Data Intell., 2020

2019

BioSamples database: an updated sample metadata hub.

Mélanie Courtot, Luca Cherubin, Adam Faulconbridge, Daniel Vaughan, Matthew Green, David Richardson, Peter W. Harrison, Patricia L. Whetzel, Helen E. Parkinson, Tony Burdett

Nucleic Acids Res., 2019

Where Does an Ontology Start?

Henriette Harmse, Mélanie Courtot, Warren Read, Nicolas Matentzoglu, David Osumi-Sutherland, Simon Jupp

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis.

David Osumi-Sutherland, Enrico Ponta, Mélanie Courtot, Helen E. Parkinson, Laura Badi

J. Biomed. Semant., 2018

2017

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.

Edison Ong, Zuoshuang Xiang, Bin Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Mélanie Courtot, Alan Ruttenberg, Yongqun He

Nucleic Acids Res., 2017

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.

Baofeng Jia, Amogelang R. Raphenya, Brian P. Alcock, Nicholas Waglechner, Peiyao Guo, Kara K. Tsang, Briony A. Lago, Biren M. Dave, Sheldon K. Pereira, Arjun N. Sharma, Sachin Doshi, Mélanie Courtot, Raymond Lo, Laura E. Williams, Jonathan G. Frye, Tariq Elsayegh, Daim Sardar, Erin L. Westman, Andrew C. Pawlowski, Timothy A. Johnson, Fiona S. L. Brinkman, Gerard D. Wright, Andrew G. McArthur

Nucleic Acids Res., 2017

Dead simple OWL design patterns.

David Osumi-Sutherland, Mélanie Courtot, James P. Balhoff, Christopher J. Mungall

J. Biomed. Semant., 2017

2016

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.

Sefa Kiliç, Dinara M. Sagitova, Shoshannah Wolfish, Benoit Bely, Mélanie Courtot, Stacy Ciufo, Tatiana A. Tatusova, Claire O'Donovan, Marcus C. Chibucos, Maria Jesus Martin, Ivan Erill

Database J. Biol. Databases Curation, 2016

Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims.

Mélanie Courtot, Alex L. Mitchell, Maxim Scheremetjew, Janet Piñero González, Laura I. Furlong, Robert D. Finn, Helen E. Parkinson

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Ten Simple Rules for Biomedical Ontology Development.

Mélanie Courtot, James Malone, Chris Mungall

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

flowCL: ontology-based cell population labelling in flow cytometry.

Mélanie Courtot, Justin Meskas, Alexander D. Diehl, Radina Droumeva, Raphael Gottardo, Adrin Jalali, Mohammad Jafar Taghiyar, Holden T. Maecker, J. Philip McCoy, Alan Ruttenberg, Richard H. Scheuermann, Ryan Remy Brinkman

Bioinform., 2015

Cell, Chemical and Anatomical Views of the Gene Ontology: Mapping to a Roche Controlled Vocabulary.

David Osumi-Sutherland, Enrico Ponta, Mélanie Courtot, Helen E. Parkinson, Laura Badi

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

UniProt-GOA: A Central Resource for Data Integration and GO Annotation.

Mélanie Courtot, Aleksandra Shypitsyna, Elena Speretta, Alexander Holmes, Tony Sawford, Tony Wardell, Maria Jesus Martin, Claire O'Donovan

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2013

Diagnostic criteria and clinical guidelines standardization to automate case classification.

Mélanie Courtot, Jie Zheng, Christian J. Stoeckert Jr., Ryan Remy Brinkman, Alan Ruttenberg

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012

Adverse events following immunization: reporting standardization, automatic case classification and signal detection.

Mélanie Courtot, Ryan Remy Brinkman, Alan Ruttenberg

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Knowledge representation in Health Research: the modeling of Adverse Events Following Immunization.

Mélanie Courtot

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011

Overcoming the ontology enrichment bottleneck with Quick Term Templates.

Philippe Rocca-Serra, Alan Ruttenberg, Martin J. O'Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan Remy Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann, Bjoern Peters

Appl. Ontology, 2011

MIREOT: The minimum information to reference an external ontology term.

Mélanie Courtot, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan Remy Brinkman, Alan Ruttenberg

Appl. Ontology, 2011

Building the OBO Foundry - One Policy at a Time.

Mélanie Courtot, Chris Mungall, Ryan Remy Brinkman, Alan Ruttenberg

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Reporting Adverse Events: Basis for a Common Representation.

Mélanie Courtot, Ryan Remy Brinkman, Alan Ruttenberg

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Towards an Adverse Event Reporting Ontology.

Mélanie Courtot, Ryan Remy Brinkman

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Modeling biomedical experimental processes with OBI.

Ryan Remy Brinkman, Mélanie Courtot, Dirk Derom, Jennifer Fostel, Yongqun He, Phillip W. Lord, James Malone, Helen E. Parkinson, Björn Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N. Soldatova, Christian J. Stoeckert Jr., Jessica A. Turner, Jie Zheng, et al.

J. Biomed. Semant., 2010

BioModels.net Web Services, a free and integrated toolkit for computational modelling software.

Chen Li, Mélanie Courtot, Nicolas Le Novère, Camille Laibe

Briefings Bioinform., 2010

2008

The OWL of Biomedical Investigations.

Mélanie Courtot, William J. Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan Remy Brinkman, Alan Ruttenberg

Proceedings of the Fifth OWLED Workshop on OWL: Experiences and Directions, 2008

2006

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka

Nucleic Acids Res., 2006