Mehmet Koyutürk

Orcid: 0000-0002-3434-5512

Affiliations:
  • Case Western Reserve University, USA


According to our database1, Mehmet Koyutürk authored at least 91 papers between 2002 and 2024.

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Bibliography

2024
Random walks with variable restarts for negative-example-informed label propagation.
Data Min. Knowl. Discov., November, 2024

Generalized Learning of Coefficients in Spectral Graph Convolutional Networks.
CoRR, 2024

2023
Generalized Gromov Wasserstein Distance for Seed-Informed Network Alignment.
Proceedings of the Complex Networks & Their Applications XII, 2023

Canonical Representation of Biological Networks Using Graph Convolution.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022
Identification of intimate partner violence from free text descriptions in social media.
J. Comput. Soc. Sci., November, 2022

Consensus embedding for multiple networks: Computation and applications.
Netw. Sci., 2022

Uncovering complementary sets of variants for predicting quantitative phenotypes.
Bioinform., 2022

Functional characterization of co-phosphorylation networks.
Bioinform., 2022

2021
Fast computation of Katz index for efficient processing of link prediction queries.
Data Min. Knowl. Discov., 2021

Node similarity-based graph convolution for link prediction in biological networks.
Bioinform., 2021

Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.
Bioinform., 2021

Co-occurrence Patterns of Intimate Partner Violence.
Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

Spatiotemporal Graph Neural Network for Performance Prediction of Photovoltaic Power Systems.
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020
Identifying health correlates of intimate partner violence against pregnant women.
Health Inf. Sci. Syst., 2020

DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases.
Bioinform., 2020

Integrated querying and version control of context-specific biological networks.
Database J. Biol. Databases Curation, 2020

Consensus Embeddings for Networks with Multiple Versions.
Proceedings of the Complex Networks & Their Applications IX, 2020

2019
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis.
PLoS Comput. Biol., 2019

Expanding Label Sets for Graph Convolutional Networks.
CoRR, 2019

Cross-population analysis for functional characterization of type II diabetes variants.
BMC Bioinform., 2019

Characterizing human genomic coevolution in locus-gene regulatory interactions.
BioData Min., 2019

2018
Querying of Disparate Association and Interaction Data in Biomedical Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Indexed Fast Network Proximity Querying.
Proc. VLDB Endow., 2018

2017
Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.
IEEE J. Biomed. Health Informatics, 2017

Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Effects of emotion and topic area on topic shifts in social media discussions.
Soc. Netw. Anal. Min., 2017

The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.
Bioinform., 2017

Linearity of network proximity measures: implications for set-based queries and significance testing.
Bioinform., 2017

Network Map of Adverse Health Effects Among Victims of Intimate Partner Violence.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Drug Response Prediction as a Link Prediction Problem.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases.
PLoS Comput. Biol., 2016

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.
BMC Bioinform., 2016

Efficient Processing of Network Proximity Queries via Chebyshev Acceleration.
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

MoBaS on Phosphorylation Data.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Emotion -and area-driven topic shift analysis in social media discussions.
Proceedings of the 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2016

2015
Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.
PLoS Comput. Biol., 2015

Whole-exome sequencing enhances prognostic classification of myeloid malignancies.
J. Biomed. Informatics, 2015

MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring.
EURASIP J. Bioinform. Syst. Biol., 2015

Link Prediction in Large Networks by Comparing the Global View of Nodes in the Network.
Proceedings of the IEEE International Conference on Data Mining Workshop, 2015

Integrated querying of disparate association and interaction data in biomedical applications.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

Assessing the collective disease association of multiple genomic loci.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
What Do We Learn from Network-Based Analysis of Genome-Wide Association Data?
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014

Prioritization of genomic locus pairs for testing epistasis.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013
Network Signatures of Survival in Glioblastoma Multiforme.
PLoS Comput. Biol., 2013

Session introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks.
Int. J. Comput. Biol. Drug Des., 2012

Using Protein Interaction Networks to Understand Complex Diseases.
Computer, 2012

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.
BMC Syst. Biol., 2012

Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.
BMC Syst. Biol., 2012

Accurate estimation of short read mapping quality for next-generation genome sequencing.
Bioinform., 2012

Network biology methods integrating biological data for translational science.
Briefings Bioinform., 2012

Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks.
J. Comput. Biol., 2011

Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.
J. Comput. Biol., 2011

Comparative analysis of algorithms for next-generation sequencing read alignment.
Bioinform., 2011

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization.
BioData Min., 2011

Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks.
Proceedings of the Research in Computational Molecular Biology, 2011

Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Session Introduction.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010
Weighted Matrix Ordering and Parallel Banded Preconditioners for Iterative Linear System Solvers.
SIAM J. Sci. Comput., 2010

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer.
PLoS Comput. Biol., 2010

Functional characterization and topological modularity of molecular interaction networks.
BMC Bioinform., 2010

COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Identification of Coordinately Dysregulated Subnetworks in Complex Phenotypes.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

Role of Centrality in Network-Based Prioritization of Disease Genes.
Proceedings of the Evolutionary Computation, 2010

2009
Efficient tag detection in RFID systems.
J. Parallel Distributed Comput., 2009

Phylogenetic analysis of modularity in protein interaction networks.
BMC Bioinform., 2009

2008
Semantic indexing in structured peer-to-peer networks.
J. Parallel Distributed Comput., 2008

PHALANX: a graph-theoretic framework for test case prioritization.
Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

Annotating Pathways of Interaction Networks.
Proceedings of the Biocomputing 2008, 2008

Functional coherence in domain interaction networks.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.
J. Comput. Biol., 2007

Functional annotation of regulatory pathways.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis.
ACM Trans. Math. Softw., 2006

Pairwise Alignment of Protein Interaction Networks.
J. Comput. Biol., 2006

Detecting Conserved Interaction Patterns in Biological Networks.
J. Comput. Biol., 2006

Inferring functional information from domain co-evolution.
Bioinform., 2006

CONQUEST: A Coarse-Grained Algorithm for Constructing Summaries of Distributed Discrete Datasets.
Algorithmica, 2006

2005
Compression, Clustering, and Pattern Discovery in Very High-Dimensional Discrete-Attribute Data Sets.
IEEE Trans. Knowl. Data Eng., 2005

Iterative-improvement-based declustering heuristics for multi-disk databases.
Inf. Syst., 2005

Redundant reader elimination in RFID systems.
Proceedings of the Second Annual IEEE Communications Society Conference on Sensor and Ad Hoc Communications and Networks, 2005

Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution.
Proceedings of the Research in Computational Molecular Biology, 2005

2004
Conquest: A Distributed Tool for Constructing Summaries of High-Dimensional Discrete Attribute Data Sets.
Proceedings of the Fourth SIAM International Conference on Data Mining, 2004

An efficient algorithm for detecting frequent subgraphs in biological networks.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
PROXIMUS: a framework for analyzing very high dimensional discrete-attributed datasets.
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003

Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
Algebraic Techniques for Analysis of Large Discrete-Valued Datasets.
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002


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