Md. Shamsuzzoha Bayzid

According to our database, Md. Shamsuzzoha Bayzid authored at least 26 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting.

Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid

Proceedings of the Comparative Genomics - 21st International Conference, 2024

2023

BEENE: deep learning-based nonlinear embedding improves batch effect estimation.

Md Ashiqur Rahman, Abdullah Aman Tutul, Mahfuza Sharmin, Md. Shamsuzzoha Bayzid

Bioinform., August, 2023

Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees.

Md. Shamsuzzoha Bayzid

J. Comput. Biol., February, 2023

CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets.

Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference.

Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman

IEEE Trans. Cybern., 2022

Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.

Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid

J. Comput. Biol., 2022

PASTA with many application-aware optimization criteria for alignment based phylogeny inference.

Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman

Comput. Biol. Chem., 2022

EGRET: edge aggregated graph attention networks and transfer learning improve protein-protein interaction site prediction.

Sazan Mahbub, Md. Shamsuzzoha Bayzid

Briefings Bioinform., 2022

Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements.

Navid Bin Hasan, Avijit Biswas, Metin Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid

Proceedings of the Comparative Genomics - 19th International Conference, 2022

QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.

Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid

Proceedings of the Research in Computational Molecular Biology, 2022

2021

wQFM: highly accurate genome-scale species tree estimation from weighted quartets.

Mahim Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid

Bioinform., 2021

SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm.

Nabil Ibtehaz, Ishtiaque Ahmed, Md. Sabbir Ahmed, M. Sohel Rahman, Rajeev K. Azad, Md. Shamsuzzoha Bayzid

Briefings Bioinform., 2021

Biological computation and computational biology: survey, challenges, and discussion.

Zaineb Chelly Dagdia, Pavel Avdeyev, Md. Shamsuzzoha Bayzid

Artif. Intell. Rev., 2021

3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks.

Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid

Proceedings of the IEEE/RSJ International Conference on Intelligent Robots and Systems, 2021

2020

Align-gram : Rethinking the Skip-gram Model for Protein Sequence Analysis.

Nabil Ibtehaz, S. M. Shakhawat Hossain Sourav, Md. Shamsuzzoha Bayzid, M. Sohel Rahman

CoRR, 2020

SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction.

Mostofa Rafid Uddin, Sazan Mahbub, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid

Bioinform., 2020

A Multi-objective Metaheuristic Approach for Accurate Species Tree Estimation.

Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Sakshar Chakravarty, Mohammad Saifur Rahman, M. Sohel Rahman

Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2019

A 'phylogeny-aware' multi-objective optimization approach for computing MSA.

Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman

Proceedings of the Genetic and Evolutionary Computation Conference, 2019

2018

Gene tree parsimony for incomplete gene trees: addressing true biological loss.

Md. Shamsuzzoha Bayzid, Tandy J. Warnow

Algorithms Mol. Biol., 2018

2017

Gene Tree Parsimony for Incomplete Gene Trees.

Md. Shamsuzzoha Bayzid, Tandy J. Warnow

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

2014

ASTRAL: genome-scale coalescent-based species tree estimation.

Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow

Bioinform., 2014

2013

Naive binning improves phylogenomic analyses.

Md. Shamsuzzoha Bayzid, Tandy J. Warnow

Bioinform., 2013

Inferring Optimal Species Trees Under Gene Duplication and Loss.

Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence.

Md. Shamsuzzoha Bayzid, Tandy J. Warnow

J. Comput. Biol., 2012

2010

Discovering Pairwise Compatibility Graphs.

Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman

Discret. Math. Algorithms Appl., 2010

2008

A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction.

Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Md. Maksudul Alam, Md. Saidur Rahman

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008