Matthieu-P. Schapranow

Orcid: 0000-0001-6601-2942

Affiliations:
  • Hasso Plattner Institute for Digital Engineering, Potsdam


According to our database1, Matthieu-P. Schapranow authored at least 39 papers between 2009 and 2024.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
Improving biomedical entity linking for complex entity mentions with LLM-based text simplification.
Database J. Biol. Databases Curation, January, 2024

2023
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards.
SN Comput. Sci., July, 2023

xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization.
CoRR, 2023

Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023

Resolving Elliptical Compounds in German Medical Text.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text.
Proceedings of the Artificial Intelligence in Medicine, 2023

A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation.
Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022
GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers.
Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval.
Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

2021
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings Bioinform., 2021

Using interpretability approaches to update "black-box" clinical prediction models: an external validation study in nephrology.
Artif. Intell. Medicine, 2021

An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software.
Proceedings of the ICT for Health, Accessibility and Wellbeing, 2021

A Comparison of Concept Embeddings for German Clinical Corpora.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines.
Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020

2019
Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

An Information and Communication Platform Supporting Analytics for Elderly Care.
Proceedings of the 5th International Conference on Information and Communication Technologies for Ageing Well and e-Health, 2019

Prediction of Acute Kidney Injury in Cardiac Surgery Patients: Interpretation using Local Interpretable Model-agnostic Explanations.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

MORPHER - A Platform to Support Modeling of Outcome and Risk Prediction in Health Research.
Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

External Validation of a "Black-Box" Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences?
Proceedings of the Artificial Intelligence in Medicine, 2019

2018
DEAME - Differential Expression Analysis Made Easy.
Proceedings of the Heterogeneous Data Management, Polystores, and Analytics for Healthcare, 2018

2016
Towards an integrated health research process: A cloud-based approach.
Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology.
Proceedings of the 30th Annual ACM Symposium on Applied Computing, 2015

A Federated In-memory Database System for Life Sciences.
Proceedings of the Real-Time Business Intelligence and Analytics, 2015

The Medical Knowledge Cockpit: Real-time analysis of big medical data enabling precision medicine.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Real-time security extensions for EPCglobal networks: case study for the pharmaceutical industry.
PhD thesis, 2014

In-memory technology enables interactive drug response analysis.
Proceedings of the 16th IEEE International Conference on e-Health Networking, 2014

Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain.
Proceedings of the Working Notes for CLEF 2014 Conference, 2014

Towards integrating the detection of genetic variants into an in-memory database.
Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

2013
HIG - An in-memory database platform enabling real-time analyses of genome data.
Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

2012
Costs of authentic pharmaceuticals: research on qualitative and quantitative aspects of enabling anti-counterfeiting in RFID-aided supply chains.
Pers. Ubiquitous Comput., 2012

2011
A Formal Model for Enabling RFID in Pharmaceutical Supply Chains.
Proceedings of the 44th Hawaii International International Conference on Systems Science (HICSS-44 2011), 2011

Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks.
Proceedings of the IEEE/IFIP 9th International Conference on Embedded and Ubiquitous Computing, 2011

2010
A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access.
Proceedings of the Fourth International Conference on Network and System Security, 2010

Enabling real-time charging for smart grid infrastructures using in-memory databases.
Proceedings of the 35th Annual IEEE Conference on Local Computer Networks, 2010

RFID Event Data Processing: An Architecture for Storing and Searching.
Proceedings of the RFID Technology-Concepts, 2010

2009
Data Loading and Caching Strategies in Service-Oriented Enterprise Applications.
Proceedings of the 2009 IEEE Congress on Services, Part I, 2009

Ensuring service backwards compatibility with Generic Web Services.
Proceedings of the International ICSE Workshop on Principles of Engineering Service-Oriented Systems, 2009


  Loading...