Matthew Scotch

According to our database, Matthew Scotch authored at least 31 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread.

Andreas Züfle, Flora D. Salim, Taylor Anderson, Matthew Scotch, Li Xiong, Kacper Sokol, Hao Xue, Ruochen Kong, David J. Heslop, Hye-Young Paik, C. Raina MacIntyre

ACM Trans. Spatial Algorithms Syst., June, 2024

2023

Foundational domains and competencies for baccalaureate health informatics education.

Saif S. Khairat, Sue S. Feldman, Arif Rana, Mohammad Faysel, Saptarshi Purkayastha, Matthew Scotch, Christina Eldredge

J. Am. Medical Informatics Assoc., September, 2023

2022

Towards Standards for Undergraduate Health Informatics Education.

Christina Eldredge, Saif Khairat, Sue S. Feldman, Matthew Scotch

Proceedings of the AMIA 2022, 2022

2021

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.

Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.

Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch

Bioinform., 2020

2019

SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.

Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez

Proceedings of the 13th International Workshop on Semantic Evaluation, 2019

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.

Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.

Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez

Bioinform., 2018

Deep neural networks and distant supervision for geographic location mention extraction.

Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez

Bioinform., 2018

Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers.

Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez

Proceedings of the 1st International Workshop on Medication and Adverse Drug Event Detection, 2018

2017

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

Daniel Magee, Marc A. Suchard, Matthew Scotch

PLoS Comput. Biol., 2017

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.

Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch

Database J. Biol. Databases Curation, 2017

CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification.

Arjun Magge, Matthew Scotch, Graciela Gonzalez

Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), 2017

2016

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.

Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez

J. Am. Medical Informatics Assoc., 2016

Session Introduction.

Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015

Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.

Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez

Bioinform., 2015

Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance.

Daniel Magee, Rachel Beard, Matthew Scotch

Proceedings of the AMIA 2015, 2015

2014

Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks.

Michael J. Kane, Natalie Price, Matthew Scotch, Peter Rabinowitz

BMC Bioinform., 2014

Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.

Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez

Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

2013

Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look?

R. Braithwaite, Matthew Scotch

BMC Medical Informatics Decis. Mak., 2013

Creating a MRSA Ontology to Support Categorization of MRSA Infections.

Susana B. Martins, Samson W. Tu, Richard Martinello, Michael Rubin, Philip Foulis, Stephen Luther, Tyler Forbush, Matthew Scotch, Brad Doebbelling, Mary K. Goldstein

Proceedings of the AMIA 2013, 2013

2011

Enhancing phylogeography by improving geographical information from GenBank.

Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez

J. Biomed. Informatics, 2011

The Yale cTAKES extensions for document classification: architecture and application.

Vijay Garla, Vincent Lo Re III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch, Julie A. Womack, Amy Justice, Cynthia Brandt

J. Am. Medical Informatics Assoc., 2011

2010

Brief review: Use of statistical analysis in the biomedical informatics literature.

Matthew Scotch, Mona Duggal, Cynthia Brandt, Zhenqui Lin, Richard N. Shiffman

J. Am. Medical Informatics Assoc., 2010

2008

Evaluation of SOVAT: An OLAP-GIS decision support system for community health assessment data analysis.

Matthew Scotch, Bambang Parmanto, Valerie Monaco

BMC Medical Informatics Decis. Mak., 2008

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.

Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch

J. Biomed. Informatics, 2008

Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.

Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung

J. Am. Medical Informatics Assoc., 2008

2006

Development of SOVAT: A numerical-spatial decision support system for community health assessment research.

Matthew Scotch, Bambang Parmanto

Int. J. Medical Informatics, 2006

2005

SOVAT: Spatial OLAP Visualization and Analysis Tool.

Matthew Scotch, Bambang Parmanto

Proceedings of the 38th Hawaii International Conference on System Sciences (HICSS-38 2005), 2005

2002

The sublanguage of cross-coverage.

Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak

Proceedings of the AMIA 2002, 2002

The Companion Project - A Wearable Computing Device for the Patient for Reducing Medical Errors and Improving Patient Care.

Matthew Scotch, George Hripcsak

Proceedings of the AMIA 2002, 2002