Matthew P. Jacobson

Orcid: 0000-0001-6262-655X

According to our database1, Matthew P. Jacobson authored at least 19 papers between 2004 and 2016.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2016
Defining the Product Chemical Space of Monoterpenoid Synthases.
PLoS Comput. Biol., 2016

Non-degradative Ubiquitination of Protein Kinases.
PLoS Comput. Biol., 2016

Dihedral Angle-Based Sampling of Natural Product Polyketide Conformations: Application to Permeability Prediction.
J. Chem. Inf. Model., 2016

Simple Predictive Models of Passive Membrane Permeability Incorporating Size-Dependent Membrane-Water Partition.
J. Chem. Inf. Model., 2016

2014
Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach.
PLoS Comput. Biol., 2014

The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery.
PLoS Comput. Biol., 2014

Prediction of Substrates for Glutathione Transferases by Covalent Docking.
J. Chem. Inf. Model., 2014

2013
Discovery of new enzymes and metabolic pathways by using structure and genome context.
Nat., 2013

2012
Testing Physical Models of Passive Membrane Permeation.
J. Chem. Inf. Model., 2012

2011
Phosphorylation of the Arp2 Subunit Relieves Auto-inhibitory Interactions for Arp2/3 Complex Activation.
PLoS Comput. Biol., 2011

Predicting Binding to P-Glycoprotein by Flexible Receptor Docking.
PLoS Comput. Biol., 2011

A New View of the Bacterial Cytosol Environment.
PLoS Comput. Biol., 2011

A Molecular Mechanics Approach to Modeling Protein-Ligand Interactions: Relative Binding Affinities in Congeneric Series.
J. Chem. Inf. Model., 2011

2010
Modeling Conformational Ensembles of Slow Functional Motions in Pin1-WW.
PLoS Comput. Biol., 2010

2007
An atomistic model of passive membrane permeability: application to a series of FDA approved drugs.
J. Comput. Aided Mol. Des., 2007

2006
Conformational Changes in Protein Loops and Helices Induced by Post-Translational Phosphorylation.
PLoS Comput. Biol., 2006

Physics-Based Scoring of Protein-Ligand Complexes: Enrichment of Known Inhibitors in Large-Scale Virtual Screening.
J. Chem. Inf. Model., 2006

What role do surfaces play in GB models? A new-generation of surface-generalized born model based on a novel gaussian surface for biomolecules.
J. Comput. Chem., 2006

2004
A kinematic view of loop closure.
J. Comput. Chem., 2004


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