Matthew DeJongh

According to our database, Matthew DeJongh authored at least 9 papers between 2007 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum).

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

2019

Implementing and Evaluating A Gaussian Mixture Framework for Identifying Gene Function from TnSeq Data.

Kevin Li, Rachel Chen, William Lindsey, Aaron A. Best, Matthew DeJongh, Christopher S. Henry, Nathan L. Tintle

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2017

Identification and Analysis of Bacterial Genomic Metabolic Signatures.

Nathan Bowerman, Nathan L. Tintle, Matthew DeJongh, Aaron A. Best

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2012

Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data.

Nathan L. Tintle, Alexandra Sitarik, Benjamin Boerema, Kylie Young, Aaron A. Best, Matthew DeJongh

BMC Bioinform., 2012

CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.

Matthew DeJongh, Benjamin Bockstege, Paul Frybarger, Nicholas L. Hazekamp, Joshua Kammeraad, Travis McGeehan

Bioinform., 2012

2011

Increasing engagement and enrollment in breadth-first introductory courses using authentic computing tasks.

Ryan L. McFall, Matthew DeJongh

Proceedings of the 42nd ACM technical symposium on Computer science education, 2011

2008

Gene set analyses for interpreting microarray experiments on prokaryotic organisms.

Nathan L. Tintle, Aaron A. Best, Matthew DeJongh, Dirk Van Bruggen, Fred Heffron, Steffen Porwollik, Ronald C. Taylor

BMC Bioinform., 2008

2007

Toward the automated generation of genome-scale metabolic networks in the SEED.

Matthew DeJongh, Kevin Formsma, Paul Boillot, John Gould, Matthew Rycenga, Aaron A. Best

BMC Bioinform., 2007