Matías R. Machado

According to our database, Matías R. Machado authored at least 5 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

AmberTools.

David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.

J. Chem. Inf. Model., October, 2023

2021

Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika Virus.

Martín Soñora, Leandro Martínez, Sergio Pantano, Matías R. Machado

J. Chem. Inf. Model., 2021

2018

Multiscale modelization in a small virus: Mechanism of proton channeling and its role in triggering capsid disassembly.

Juan Francisco Viso, Patricia Belelli, Matías R. Machado, Humberto González, Sergio Pantano, María Julia Amundarain, Fernando Zamarreño, Maria Marta Branda, Diego M. A. Guérin, Marcelo D. Costabel

PLoS Comput. Biol., 2018

2016

SIRAH tools: mapping, backmapping and visualization of coarse-grained models.

Matías R. Machado, Sergio Pantano

Bioinform., 2016

2013

Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level.

Pablo D. Dans, Leonardo Darré, Matías R. Machado, Ari Zeida, Astrid F. Brandner, Sergio Pantano

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013