Mathieu Blanchette
Orcid: 0000-0002-9555-860XAffiliations:
- McGill University, Centre for Bioinformatics, Montreal, QC, Canada
- University of California, Santa Cruz, Center for Biomolecular Science and Engineering, Santa Cruz, CA, USA (former)
- University of Washington, Department of Computer Science, Seattle, WA, USA (former, PhD 2002)
According to our database1,
Mathieu Blanchette
authored at least 80 papers
between 1997 and 2024.
Collaborative distances:
Collaborative distances:
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Online presence:
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on scopus.com
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on cs.mcgill.ca
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on orcid.org
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on isni.org
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on d-nb.info
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Bibliography
2024
BMC Bioinform., December, 2024
Bioinform., February, 2024
CoRR, 2024
Leveraging Structure Between Environments: Phylogenetic Regularization Incentivizes Disentangled Representations.
CoRR, 2024
Proceedings of the Twelfth International Conference on Learning Representations, 2024
Learning the Game: Decoding the Differences between Novice and Expert Players in a Citizen Science Game with Millions of Players.
Proceedings of the 19th International Conference on the Foundations of Digital Games, 2024
2023
Frontiers Bioinform., May, 2023
Proceedings of The ACM Collective Intelligence Conference, 2023
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, 2023
2021
Proceedings of the 9th International Conference on Learning Representations, 2021
2020
oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species.
Nucleic Acids Res., 2020
Graph neural representational learning of RNA secondary structures for predicting RNA-protein interactions.
Bioinform., 2020
EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM.
Bioinform., 2020
Phylogenetic Manifold Regularization: A semi-supervised approach to predict transcription factor binding sites.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Bioinform., 2019
Bioinform., 2019
2018
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018
2017
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.
Bioinform., 2017
Proceedings of the Fifth AAAI Conference on Human Computation and Crowdsourcing, 2017
2016
Algorithms Mol. Biol., 2016
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015
2014
Proceedings of the Seconf AAAI Conference on Human Computation and Crowdsourcing, 2014
2013
Nucleic Acids Res., 2013
2012
BMC Bioinform., 2012
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites.
BMC Bioinform., 2012
Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Mapping Association between Long-Range <i>cis</i>-Regulatory Regions and Their Target Genes Using Synteny.
J. Comput. Biol., 2011
J. Comput. Biol., 2011
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.
BMC Bioinform., 2011
Bioinform., 2011
2010
Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human.
PLoS Comput. Biol., 2010
Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks.
J. Comput. Biol., 2010
Predicting direct protein interactions from affinity purification mass spectrometry data.
Algorithms Mol. Biol., 2010
Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010
Mapping Association between Long-Range <i>Cis</i>-Regulatory Regions and Their Target Genes Using Comparative Genomics.
Proceedings of the Comparative Genomics - International Workshop, 2010
A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
2009
A Whole Genome Study and Identification of Specific Carcinogenic Regions of the Human Papilloma Viruses.
J. Comput. Biol., 2009
2008
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008
Improving the prediction of mRNA extremities in the parasitic protozoan <i>Leishmania</i>.
BMC Bioinform., 2008
Proceedings of the Comparative Genomics, International Workshop, 2008
Proceedings of the Comparative Genomics, International Workshop, 2008
2007
PReMod: a database of genome-wide mammalian <i>cis</i>-regulatory module predictions.
Nucleic Acids Res., 2007
J. Comput. Biol., 2007
J. Comput. Biol., 2007
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees.
BMC Bioinform., 2007
2006
A New Efficient Method for Assessing Missing Nucleotides in DNA Sequences in the Framework of a Generic Evolutionary Model.
Proceedings of the Data Science and Classification, 2006
Nucleic Acids Res., 2006
J. Bioinform. Comput. Biol., 2006
Proceedings of the Comparative Genomics, 2006
Proceedings of the Comparative Genomics, 2006
Proceedings of the Comparative Genomics, 2006
Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006
2004
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences.
BMC Bioinform., 2004
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004
Proceedings of the Biocomputing 2004, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
2003
Nucleic Acids Res., 2003
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
Proceedings of the 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 2003
2002
2001
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001
Separating real motifs from their artifacts.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
Proceedings of the Computational Science - ICCS 2001, 2001
2000
An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1999
Probability models for genome rearrangement and linear invariants for phylogenetic inference.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
1998
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998
1997
Proceedings of the Computing and Combinatorics, Third Annual International Conference, 1997