Matej Oresic

According to our database, Matej Oresic authored at least 24 papers between 1995 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Deep learning meets metabolomics: a methodological perspective.

Partho Sen, Santosh Lamichhane, Vivek Bhakta Mathema, Aidan J. McGlinchey, Alex M. Dickens, Sakda Khoomrung, Matej Oresic

Briefings Bioinform., 2021

2015

Self-organization and missing values in SOM and GTM.

Tommi Vatanen, Maria Osmala, Tapani Raiko, Krista Lagus, Marko Sysi-Aho, Matej Oresic, Timo Honkela, Harri Lähdesmäki

Neurocomputing, 2015

2014

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.

Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä

BMC Syst. Biol., 2014

2011

Metabolic Regulation in Progression to Autoimmune Diabetes.

Marko Sysi-Aho, Andrey Ermolov, Peddinti V. Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen-Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Oresic

PLoS Comput. Biol., 2011

Matching samples of multiple views.

Abhishek Tripathi, Arto Klami, Matej Oresic, Samuel Kaski

Data Min. Knowl. Discov., 2011

Compartmentation of glycogen metabolism revealed from ¹³C isotopologue distributions.

Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante

BMC Syst. Biol., 2011

MPEA - metabolite pathway enrichment analysis.

Matti Kankainen, Peddinti V. Gopalacharyulu, Liisa Holm, Matej Oresic

Bioinform., 2011

Cross-Species Translation of Multi-way Biomarkers.

Tommi Suvitaival, Ilkka Huopaniemi, Matej Oresic, Samuel Kaski

Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2011, 2011

2010

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.

Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic

BMC Bioinform., 2010

Multivariate multi-way analysis of multi-source data.

Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski

Bioinform., 2010

Graphical Multi-way Models.

Ilkka Huopaniemi, Tommi Suvitaival, Matej Oresic, Samuel Kaski

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010

METAtarget - Extracting Key Enzymes of Metabolic Regulation from Highthroughput Metabolomics Data using KEGG REACTION Information.

Jan Budczies, Carsten Denkert, Berit M. Müller, Scarlet F. Brockmöller, Manfred Dietel, Jules L. Griffin, Matej Oresic, Oliver Fiehn

Proceedings of the German Conference on Bioinformatics 2010, 2010

Searching for Linear Dependencies between Heart Magnetic Resonance Images and Lipid Profiles.

Marko Sysi-Aho, Juha Koikkalainen, Jyrki Lötjönen, Tuulikki Seppänen-Laakso, Hans Söderlund, Tiina Heliö, Matej Oresic

Proceedings of the Algorithms and Applications, 2010

2009

Two-way analysis of high-dimensional collinear data.

Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski

Data Min. Knowl. Discov., 2009

2008

An integrative approach for biological data mining and visualisation.

Peddinti V. Gopalacharyulu, Erno Lindfors, Jarkko Miettinen, Catherine Bounsaythip, Matej Oresic

Int. J. Data Min. Bioinform., 2008

2007

megNet®: Visualization and Modelling Environment for Translational Medicine.

Matej Oresic, Jyrki Lötjönen, Catherine Bounsaythip

ERCIM News, 2007

Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis.

Laxman Yetukuri, Mikko Katajamaa, Gema Medina-Gómez, Tuulikki Seppänen-Laakso, Antonio Vidal-Puig, Matej Oresic

BMC Syst. Biol., 2007

Normalization method for metabolomics data using optimal selection of multiple internal standards.

Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic

BMC Bioinform., 2007

Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process.

Laura Elo, Henna Järvenpää, Matej Oresic, Riitta Lahesmaa, Tero Aittokallio

Bioinform., 2007

Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles.

Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Järvinen, Matej Oresic

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data.

Mikko Katajamaa, Jarkko Miettinen, Matej Oresic

Bioinform., 2006

2005

Processing methods for differential analysis of LC/MS profile data.

Mikko Katajamaa, Matej Oresic

BMC Bioinform., 2005

Data integration and visualization system for enabling conceptual biology.

Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

1995

Tracking metastable states to free-energy global minima.

Bruce W. Church, Matej Oresic, David Shalloway

Proceedings of the Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, 1995