Masanori Arita

According to our database, Masanori Arita authored at least 41 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

InChI isotopologue and isotopomer specifications.

Hunter N. B. Moseley, Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, Emma Schymanski

J. Cheminformatics, December, 2024

2021

The international nucleotide sequence database collaboration.

Masanori Arita, Ilene Karsch-Mizrachi, Guy Cochrane

Nucleic Acids Res., 2021

2020

Development of the portal site of COVID-19 data in Japan: poster abstract.

Jun-ichi Onami, Koji Sakaguchi, Masanori Arita, Kazutsuna Yamaji

Proceedings of the SenSys '20: The 18th ACM Conference on Embedded Networked Sensor Systems, 2020

2019

Rearrangement analysis of multiple bacterial genomes.

Mehwish Noureen, Ipputa Tada, Takeshi Kawashima, Masanori Arita

BMC Bioinform., December, 2019

2018

Comparative analysis of probiotic bacteria based on a new definition of core genome.

Maria Satti, Yasuhiro Tanizawa, Akihito Endo, Masanori Arita

J. Bioinform. Comput. Biol., 2018

2017

Computational Metabolomics (NII Shonan Meeting 2017-3).

Masanori Arita, Sebastian Böcker, Steffen Neumann

NII Shonan Meet. Rep., 2017

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library.

Hiroshi Tsugawa, Kazutaka Ikeda, Wataru Tanaka, Yuya Senoo, Makoto Arita, Masanori Arita

J. Cheminformatics, 2017

Visualization of consensus genome structure without using a reference genome.

Ipputa Tada, Yasuhiro Tanizawa, Masanori Arita

BMC Genom., 2017

2016

PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems.

Kansuporn Sriyudthsak, Ramon Francisco Pacquiao Mejia, Masanori Arita, Masami Y. Hirai

Nucleic Acids Res., 2016

2014

MRMPROBS suite for metabolomics using large-scale MRM assays.

Hiroshi Tsugawa, Mitsuhiro Kanazawa, Atsushi Ogiwara, Masanori Arita

Bioinform., 2014

2012

DNA Memory.

Masanori Arita, Masami Hagiya, Masahiro Takinoue, Fumiaki Tanaka

Proceedings of the Handbook of Natural Computing, 2012

2011

Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics.

Henning Redestig, Miyako Kusano, Kaworu Ebana, Makoto Kobayashi, Akira Oikawa, Yozo Okazaki, Fumio Matsuda, Masanori Arita, Naoko Fujita, Kazuki Saito

BMC Syst. Biol., 2011

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.

Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito

BMC Syst. Biol., 2011

GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA).

Hiroshi Tsugawa, Yuki Tsujimot, Masanori Arita, Takeshi Bamba, Eiichiro Fukusaki

BMC Bioinform., 2011

Reconstructing phylogeny from metabolic substrate-product relationships.

Che-Wei Chang, Ping-Chiang Lyu, Masanori Arita

BMC Bioinform., 2011

2010

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.

Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita

BMC Bioinform., 2010

2009

A pitfall of wiki solution for biological databases.

Masanori Arita

Briefings Bioinform., 2009

Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations.

Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka

Proceedings of the German Conference on Bioinformatics 2009, 2009

Ontology Checking and Integration of Crude-Drug and Kampo Information.

Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya

Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008

Time-resolved metabolomics reveals metabolic modulation in rice foliage.

Shigeru Sato, Masanori Arita, Tomoyoshi Soga, Takaaki Nishioka, Masaru Tomita

BMC Syst. Biol., 2008

Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database.

Masanori Arita, Kazuhiro Suwa

BioData Min., 2008

Comparison of ESI-MS Spectra in MassBank Database.

Hisayuki Horai, Masanori Arita, Takaaki Nishioka

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007

Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms.

Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya

Inf. Media Technol., 2007

Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana.

Miyako Kusano, Atsushi Fukushima, Masanori Arita, Pär Jonsson, Thomas Moritz, Makoto Kobayashi, Naomi Hayashi, Takayuki Tohge, Kazuki Saito

BMC Syst. Biol., 2007

Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions.

Kinya Okada, Kiyoshi Asai, Masanori Arita

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns.

Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh

Bioinform., 2006

2005

Searching Similar Modules in Protein Interaction Netwo.

Hiroyuki Oka, Masanori Arita

Proceedings of the 21st International Conference on Data Engineering Workshops, 2005

2004

Comma-free design for DNA words.

Masanori Arita

Commun. ACM, 2004

Writing Information into DNA.

Masanori Arita

Proceedings of the Aspects of Molecular Computing, 2004

2003

Dynamic modeling of genetic networks using genetic algorithm and S-system.

Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita

Bioinform., 2003

2002

DNA Sequence Design Using Templates.

Masanori Arita, Satoshi Kobayashi

New Gener. Comput., 2002

Modeling splicing sites with pairwise correlations.

Masanori Arita, Koji Tsuda, Kiyoshi Asai

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

On Template Method for DNA Sequence Design.

Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita

Proceedings of the DNA Computing, 8th International Workshop on DNA Based Computers, 2002

2000

Metabolic reconstruction using shortest paths.

Masanori Arita

Simul. Pract. Theory, 2000

Improving Sequence Design for DNA Computing.

Masanori Arita, Akio Nishikawa, Masami Hagiya, Ken Komiya, Hidetaka Gouzu, Kensaku Sakamoto

Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

Reconstructing Metabolic Pathways with New Enzyme Classification.

Masanori Arita, Kiyoshi Asai, Takaaki Nishioka

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

Successive State Transitions with I/O Interface by Molecules.

Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya

Proceedings of the DNA Computing, 6th International Workshop on DNA-Based Computers, 2000

1997

Solid phase DNA solution to the Hamiltonian path problem.

Nobuhiko Morimoto, Masanori Arita, Akira Suyama

Proceedings of the DNA Based Computers, 1997

Towards parallel evaluation and learning of Boolean μ-formulas with molecules.

Masami Hagiya, Masanori Arita, Daisuke Kiga, Kensaku Sakamoto, Shigeyuki Yokoyama

Proceedings of the DNA Based Computers, 1997

Stepwise Generation of Hamiltonian Path with Molecules.

Nobuhiko Morimoto, Masanori Arita, Akira Suyama

Proceedings of the Biocomputing and emergent computation: Proceedings of BCEC97, 1997

1995

Knowledge-Based Simulation of Regulatory Action in lambda phage.

Tomoaki Shimada, Masami Hagiya, Masanori Arita, Shin-ya Nishizaki, Chew Lim Tan

Int. J. Artif. Intell. Tools, 1995