Masakazu Sekijima

According to our database, Masakazu Sekijima authored at least 23 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Mothra: Multiobjective <i>de novo</i> Molecular Generation Using Monte Carlo Tree Search.

Takamasa Suzuki, Dian Ma, Nobuaki Yasuo, Masakazu Sekijima

J. Chem. Inf. Model., 2024

IEV2Mol: Molecular Generative Model Considering Protein-Ligand Interaction Energy Vectors.

Mami Ozawa, Shogo Nakamura, Nobuaki Yasuo, Masakazu Sekijima

J. Chem. Inf. Model., 2024

2022

Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides.

Kazuki Z. Yamamoto, Nobuaki Yasuo, Masakazu Sekijima

J. Chem. Inf. Model., 2022

An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning.

Mami Ozawa, Nobuaki Yasuo, Masakazu Sekijima

Proceedings of the 22nd IEEE International Conference on Bioinformatics and Bioengineering, 2022

2021

MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning.

Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima

J. Cheminformatics, 2021

2020

ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.

Sherlyn Jemimah, Masakazu Sekijima, M. Michael Gromiha

Bioinform., 2020

2019

Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning.

Nobuaki Yasuo, Masakazu Sekijima

J. Chem. Inf. Model., 2019

2018

Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).

Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden

NII Shonan Meet. Rep., 2018

Compound property enhancement by virtual compound synthesis.

Naoki Arai, Shunsuke Yoshikawa, Nobuaki Yasuo, Ryunosuke Yoshino, Masakazu Sekijima

J. Bioinform. Comput. Biol., 2018

CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction.

Nobuaki Yasuo, Yusuke Nakashima, Masakazu Sekijima

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

BMC Bioinform., February, 2016

2015

GPU Accelerated Molecular Dynamics with Method of Heterogeneous Load Balancing.

Takuro Udagawa, Masakazu Sekijima

Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

2012

Distance-based Factor Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules.

Takahiro Shinozaki, Toshinao Iwaki, Shiqiao Du, Masakazu Sekijima, Sadaoki Furui

Inf. Media Technol., 2012

2011

The Power Efficiency of GPUs in Multi Nodes Environment with Molecular Dynamics.

Takuro Udagawa, Masakazu Sekijima

Proceedings of the 2011 International Conference on Parallel Processing Workshops, 2011

2008

Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation.

Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama

Inf. Media Technol., 2008

Large-Scale Computing for Protein-Protein Binding Free Energy Calculation.

Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2008

2007

Optimization of Molecular Dynamics Simulation on Cell Processor.

Manami Sasaki, Masakazu Sekijima, Masami Takata, Kazuki Joe

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Development of an SVM based Prediction System for Metalbinding Sites in Protein.

Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Development of Molecular Dynamics Simulation Based Flexible Docking System.

Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L.

Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, Shigenori Shimizu

Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2007

High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection.

Junta Doi, Kentaro Shimizu, Masakazu Sekijima

Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2007

2003

Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing.

Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama

Proceedings of the High Performance Computing, 5th International Symposium, 2003

2002

Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment.

Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu

Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2002