Marzia Di Filippo

According to our database, Marzia Di Filippo authored at least 11 papers between 2016 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation.

Marzia Di Filippo, Dario Pescini, Bruno Giovanni Galuzzi, Marcella Bonanomi, Daniela Gaglio, Eleonora Mangano, Clarissa Consolandi, Lilia Alberghina, Marco Vanoni, Chiara Damiani

PLoS Comput. Biol., 2022

2021

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction.

Marzia Di Filippo, Chiara Damiani, Dario Pescini

PLoS Comput. Biol., 2021

2020

The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System.

Davide Maspero, Chiara Damiani, Marco Antoniotti, Alex Graudenzi, Marzia Di Filippo, Marco Vanoni, Giulio Caravagna, Riccardo Colombo, Daniele Ramazzotti, Dario Pescini

Fundam. Informaticae, 2020

2019

New constraint-based approaches to tackle the multiple sides of cell metabolic plasticity and heterogeneity.

Marzia Di Filippo

PhD thesis, 2019

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism.

Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans V. Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri

PLoS Comput. Biol., 2019

Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata.

Davide Maspero, Marzia Di Filippo, Fabrizio Angaroni, Dario Pescini, Giancarlo Mauri, Marco Vanoni, Alex Graudenzi, Chiara Damiani

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power.

Alex Graudenzi, Davide Maspero, Marzia Di Filippo, Marco Gnugnoli, Claudio Isella, Giancarlo Mauri, Enzo Medico, Marco Antoniotti, Chiara Damiani

J. Biomed. Informatics, 2018

2017

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.

Chiara Damiani, Marzia Di Filippo, Dario Pescini, Davide Maspero, Riccardo Colombo, Giancarlo Mauri

Bioinform., 2017

2016

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models.

Marzia Di Filippo, Riccardo Colombo, Chiara Damiani, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri

Comput. Biol. Chem., 2016

Constraint-Based Modeling and Simulation of Cell Populations.

Marzia Di Filippo, Chiara Damiani, Riccardo Colombo, Dario Pescini, Giancarlo Mauri

Proceedings of the Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 2016

Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling.

Chiara Damiani, Riccardo Colombo, Marzia Di Filippo, Dario Pescini, Giancarlo Mauri

Proceedings of the Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 2016