Marylyn D. Ritchie
Orcid: 0000-0002-1208-1720Affiliations:
- Pennsylvania State University, PA, USA
According to our database1,
Marylyn D. Ritchie
authored at least 104 papers
between 2002 and 2024.
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Bibliography
2024
Interpretable deep clustering survival machines for Alzheimer's disease subtype discovery.
Medical Image Anal., 2024
Leveraging Social Determinants of Health in Alzheimer's Research Using LLM-Augmented Literature Mining and Knowledge Graphs.
CoRR, 2024
Genetic Algorithm Selection of Interacting Features (GASIF) for Selecting Biological Gene-Gene Interactions.
Proceedings of the Genetic and Evolutionary Computation Conference, 2024
2023
Class-Balanced Deep Learning with Adaptive Vector Scaling Loss for Dementia Stage Detection.
Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023
Extending Tree-Based Automated Machine Learning to Biomedical Image and Text Data Using Custom Feature Extractors.
Proceedings of the Companion Proceedings of the Conference on Genetic and Evolutionary Computation, 2023
2022
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.
J. Am. Medical Informatics Assoc., 2022
Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach.
BMC Bioinform., 2022
2021
Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies.
npj Digit. Medicine, 2021
Multidimensional representations in late-life depression: convergence in neuroimaging, cognition, clinical symptomatology and genetics.
CoRR, 2021
eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals.
BioData Min., 2021
2020
BioData Min., 2020
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021
, 2020
Statistical Impact of Sample Size and Imbalance on Multivariate Analysis in silico and A Case Study in the UK Biobank.
Proceedings of the AMIA 2020, 2020
2019
Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico.
BMC Bioinform., 2019
Innovative strategies for annotating the "relationSNP" between variants and molecular phenotypes.
BioData Min., 2019
Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies.
BioData Min., 2019
Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43, 870 individuals from the eMERGE network.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
Influence of tissue context on gene prioritization for predicted transcriptome-wide association studies.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019
2018
A simulation study investigating power estimates in phenome-wide association studies.
BMC Bioinform., 2018
Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants.
Bioinform., 2018
BioData Min., 2018
How powerful are summary-based methods for identifying expression-trait associations under different genetic architectures?.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Evaluation of PrediXcan for prioritizing GWAS associations and predicting gene expression.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
2017
Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease.
BMC Medical Informatics Decis. Mak., 2017
Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma.
J. Am. Medical Informatics Assoc., 2017
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals.
BioData Min., 2017
Identifying Genetic Associations with Variability in Metabolic Health and Blood Count Laboratory Values: Diving into the Quantitative Traits by Leveraging Longitudinal Data from an EHR.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017
2016
Bioinform., 2016
BioData Min., 2016
Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network.
BioData Min., 2016
Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association Studies.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
Biofilter as a Functional Annotation Pipeline for Common and Rare Copy Number Burden.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
Knowledge Driven Binning and PheWAS Analysis in Marshfield Personalized Medicine Research Project Using BioBin.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
2015
Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer.
J. Biomed. Informatics, 2015
Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction.
J. Am. Medical Informatics Assoc., 2015
Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR).
BioData Min., 2015
Binning Somatic Mutations Based on Biological Knowledge for Predicting Survival: An Application in Renal Cell Carcinoma.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Contrasting Association Results Between Existing PheWAS Phenotype Definition Methods and Five Validated Electronic Phenotypes.
Proceedings of the AMIA 2015, 2015
2014
Bioinform., 2014
BioData Min., 2014
Diverse convergent evidence in the genetic analysis of complex disease: coordinating omic, informatic, and experimental evidence to better identify and validate risk factors.
BioData Min., 2014
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014
An integrated analysis of genome-wide DNA methylation and genetic variants underlying etoposide-induced cytotoxicity in European and African populations.
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014
Replication of SCN5A Associations with Electrocardiographic Traits in African Americans from Clinical and Epidemiologic Studies.
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014
2013
BioData Min., 2013
Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development.
BioData Min., 2013
BioData Min., 2013
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network.
BioData Min., 2013
Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
A Graph-Based Integration of Multimodal Brain Imaging Data for the Detection of Early Mild Cognitive Impairment (E-MCI).
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013
Evaluation of Parameter Contribution to Neural Network Size and Fitness in ATHENA for Genetic Analysis.
Proceedings of the Genetic Programming Theory and Practice XI [GPTP 2013, 2013
2012
A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data.
J. Am. Medical Informatics Assoc., 2012
Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View.
BioData Min., 2012
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012
2011
Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin.
J. Am. Medical Informatics Assoc., 2011
Rule based classifier for the analysis of gene-gene and gene-environment interactions in genetic association studies.
BioData Min., 2011
BioData Min., 2011
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011
Use of Biological Knowledge to Inform The Analysis of Gene-Gene Interactions Involved in Modulating Virologic Failure with Efavirenz-Containing Treatment Regimens in Art-Naive Actg Clinical Trials Participants.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011
ATHENA Optimization: The Effect of Initial Parameter Settings across Different Genetic Models.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2011
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
2010
PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.
Bioinform., 2010
Bioinform., 2010
ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci.
BioData Min., 2010
Synthesis-View: visualization and interpretation of SNP association results for multi-cohort, multi-phenotype data and meta-analysis.
BioData Min., 2010
Finding Unique Filter Sets in PLATO: A Precursor to Efficient Interaction Analysis in GWAS Data.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Incorporating Domain Knowledge into Evolutionary Computing for Discovering Gene-Gene Interaction.
Proceedings of the Parallel Problem Solving from Nature, 2010
Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of small main effects.
Proceedings of the Genetic and Evolutionary Computation Conference, 2010
Grammatical Evolution of Neural Networks for Discovering Epistasis among Quantitative Trait Loci.
Proceedings of the Evolutionary Computation, 2010
2009
LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium.
BioData Min., 2009
Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks.
Proceedings of the Evolutionary Computation, 2009
2008
Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction.
BMC Bioinform., 2008
BioData Min., 2008
A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance.
Proceedings of the Genetic and Evolutionary Computation Conference, 2008
Proceedings of the Evolutionary Computation, 2008
2007
Genetic programming neural networks: A powerful bioinformatics tool for human genetics.
Appl. Soft Comput., 2007
Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2007
Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007
2006
GPNN: Power studies and applications of a neural network method for detecting gene-gene interactions in studies of human disease.
BMC Bioinform., 2006
Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions.
Bioinform., 2006
Risk Factor Interactions and Genetic Effects Associated with Post-Operative Atrial Fibrillation.
Proceedings of the Biocomputing 2006, 2006
Data Simulation Software for Whole-Genome Association and Other Studies in Human Genetics.
Proceedings of the Biocomputing 2006, 2006
Alternative cross-over strategies and selection techniques for grammatical evolution optimized neural networks.
Proceedings of the Genetic and Evolutionary Computation Conference, 2006
Proceedings of the Applications of Evolutionary Computing, 2006
Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
2005
Proceedings of the Biocomputing 2005, 2005
Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?.
Proceedings of the Applications of Evolutionary Computing, 2005
2004
An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene Interactions on risk of myocardial infarction: The importance of model validation.
BMC Bioinform., 2004
Appl. Soft Comput., 2004
Proceedings of the Genetic and Evolutionary Computation, 2004
2003
Optimizationof neural network architecture using genetic programming improvesdetection and modeling of gene-gene interactions in studies of humandiseases.
BMC Bioinform., 2003
Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions.
Bioinform., 2003
2002
Application Of Genetic Algorithms To The Discovery Of Complex Models For Simulation Studies In Human Genetics.
Proceedings of the GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, 2002