Martin Vingron
Orcid: 0000-0002-1765-4241Affiliations:
- Max Planck Institute for Molecular Genetics, Berlin, Germany
According to our database1,
Martin Vingron
authored at least 138 papers
between 1989 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on zbmath.org
-
on orcid.org
-
on id.loc.gov
-
on d-nb.info
-
on isni.org
-
on dl.acm.org
On csauthors.net:
Bibliography
2023
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction.
Bioinform., November, 2023
Bioinform., 2023
2022
Patterns, 2022
J. Comput. Biol., 2022
J. Comput. Biol., 2022
2021
Bioinform., 2021
ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood.
Bioinform., 2021
2020
PLoS Comput. Biol., 2020
2019
BMC Bioinform., 2019
Bioinform., 2019
2018
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.
PLoS Comput. Biol., 2018
Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction.
CoRR, 2018
2017
Bioinform., 2017
2016
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns.
PLoS Comput. Biol., 2016
2015
histoneHMM: Differential analysis of histone modifications with broad genomic footprints.
BMC Bioinform., 2015
2014
2013
Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks.
PLoS Comput. Biol., 2013
Bioinform., 2013
2012
J. Comput. Biol., 2012
J. Am. Medical Informatics Assoc., 2012
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity.
BMC Genom., 2012
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Bioinform., 2012
<i>Oases: </i> robust <i>de novo</i> RNA-seq assembly across the dynamic range of expression levels.
Bioinform., 2012
Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.
Bioinform., 2012
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.
Bioinform., 2012
2011
Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development.
PLoS Comput. Biol., 2011
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series.
BMC Bioinform., 2011
Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.
BMC Bioinform., 2011
DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach.
Algorithms Mol. Biol., 2011
Proceedings of the Combinatorial Pattern Matching - 22nd Annual Symposium, 2011
2010
Nucleic Acids Res., 2010
J. Comput. Biol., 2010
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.
BMC Bioinform., 2010
2009
Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions.
PLoS Comput. Biol., 2009
J. Comput. Biol., 2009
BMC Bioinform., 2009
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Bioinform., 2009
Statistical detection of cooperative transcription factors with similarity adjustment.
Bioinform., 2009
Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009
2008
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions.
PLoS Comput. Biol., 2008
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands.
J. Comput. Biol., 2008
BMC Bioinform., 2008
Natural similarity measures between position frequency matrices with an application to clustering.
Bioinform., 2008
Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration.
Bioinform., 2008
Briefings Bioinform., 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
2007
Nucleic Acids Res., 2007
J. Comput. Biol., 2007
Discret. Appl. Math., 2007
The Otto Warburg International Summer School and Workshop on Networks and Regulation.
BMC Bioinform., 2007
Bioinform., 2007
Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis.
Bioinform., 2007
Bioinform., 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
Normalization and quantification of differential expression in gene expression microarrays.
Briefings Bioinform., 2006
Proceedings of the Research in Computational Molecular Biology, 2006
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets.
Proceedings of the Research in Computational Molecular Biology, 2006
Proceedings of the Comparative Genomics, 2006
Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006
2005
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors.
Bioinform., 2005
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Proceedings of the Managing and Mining Genome Information: Frontiers in Bioinformatics, 30. October, 2005
05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Proceedings of the Managing and Mining Genome Information: Frontiers in Bioinformatics, 30. October, 2005
2004
Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays).
it Inf. Technol., 2004
Annotating significant pairs of transcription factor binding sites in regulatory DNA.
Silico Biol., 2004
Genome wide identification and classification of alternative splicing based on EST data.
Bioinform., 2004
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform., 2004
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.
Proceedings of the Regulatory Genomics, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
2003
J. Parallel Distributed Comput., 2003
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions.
Discret. Appl. Math., 2003
Proceedings of the Advances in Intelligent Data Analysis V, 2003
The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies.
Proceedings of the German Conference on Bioinformatics, 2003
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003
2002
Nucleic Acids Res., 2002
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
Bioinform., 2002
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
Bioinform., 2002
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
Proteome analysis based on motif statistics.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
Annotating regulatory DNA based on man-mouse genomic comparison.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
Theoretical analysis of alternative splice forms using computational methods.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
Proceedings of the COMPSTAT 2002, 2002
2001
Identifying splits with clear separation: a new class discovery method for gene expression data.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
2000
Nucleic Acids Res., 2000
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000
1999
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
Phylogeny meets sequence search.
Proceedings of the German Conference on Bioinformatics, 1999
A new method for modeling protein evolution.
Proceedings of the German Conference on Bioinformatics, 1999
1998
J. Comput. Biol., 1998
Alignment and Phylogeny Construction for Biological Sequences.
Proceedings of the Fundamentals - Foundations of Computer Science, 1998
pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis.
Proceedings of the German Conference on Bioinformatics, 1998
Automatic clustering of large sequence databases.
Proceedings of the German Conference on Bioinformatics, 1998
Proceedings of the Mathematical Support for Molecular Biology, 1998
1997
J. Comput. Biol., 1997
J. Comput. Biol., 1997
Towards detection of sequence orthologs.
Proceedings of the German Conference on Bioinformatics, 1997
1996
Attacking Generalized tree Alignment by a Deferred Path Heuristic.
Proceedings of the German Conference on Bioinformatics, 1996
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996
Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees.
Proceedings of the Mathematical Hierarchies and Biology, 1996
1993
Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993
1989
Comput. Appl. Biosci., 1989
A new interactive protein sequence alignment program and comparison of its results with widely used algorithms.
Comput. Appl. Biosci., 1989