Martin T. Swain

According to our database, Martin T. Swain authored at least 24 papers between 2001 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Generating Reliable Genome Assemblies of Intestinal Protozoans from Clinical Samples for the Purpose of Biomarker Discovery.

Arthur Morris, Justin Pachebat, Graeme Tyson, Guy Robinson, Rachel Chalmers, Martin T. Swain

Proceedings of the Biomedical Engineering Systems and Technologies, 2019

Identifying and Resolving Genome Misassembly Issues Important for Biomarker Discovery in the Protozoan Parasite, Cryptosporidium.

Arthur Morris, Justin Pachebat, Guy Robinson, Rachel Chalmers, Martin T. Swain

Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

2016

MultiGrain/MAPPER: A distributed multiscale computing approach to modeling and simulating gene regulation networks.

Alexandru E. Mizeranschi, Martin T. Swain, Raluca Scona, Quentin Fazilleau, Bartosz Bosak, Tomasz Piontek, Piotr Kopta, Paul Thompson, Werner Dubitzky

Future Gener. Comput. Syst., 2016

DISMISS: detection of stranded methylation in MeDIP-Seq data.

Umar Khan Niazi, Kathrin K. Geyer, Martin J. Vickers, Karl F. Hoffmann, Martin T. Swain

BMC Bioinform., 2016

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Altan Kara, Martin J. Vickers, Martin T. Swain, David E. Whitworth, Narcis Fernandez-Fuentes

Bioinform., 2016

2015

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor.

Altan Kara, Martin J. Vickers, Martin T. Swain, David E. Whitworth, Narcis Fernandez-Fuentes

BMC Bioinform., 2015

2013

Fast Comparison of Microbial Genomes Using the Chaos Games Representation for Metagenomic Applications.

Martin T. Swain

Proceedings of the International Conference on Computational Science, 2013

2010

A scheduling framework for large-scale, parallel, and topology-aware applications.

Valentin Kravtsov, Pavel Bar, David Carmeli, Assaf Schuster, Martin T. Swain

J. Parallel Distributed Comput., 2010

P-found: Grid-enabling distributed repositories of protein folding and unfolding simulations for data mining.

Martin T. Swain, Cândida G. Silva, Nuno Loureiro-Ferreira, Vitaliy Ostropytskyy, João Brito, Olivier Riche, Frederic T. Stahl, Werner Dubitzky, Rui M. M. Brito

Future Gener. Comput. Syst., 2010

Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks.

Martin T. Swain, Johannes J. Mandel, Werner Dubitzky

BMC Bioinform., 2010

2009

Complex System Simulations with QosCosGrid.

Krzysztof Kurowski, Walter de Back, Werner Dubitzky, László Gulyás, George Kampis, Mariusz Mamonski, Gabor Szemes, Martin T. Swain

Proceedings of the Computational Science, 2009

Running Parallel Applications with Topology-Aware Grid Middleware.

Pavel Bar, Camille Coti, Derek Groen, Thomas Hérault, Valentin Kravtsov, Assaf Schuster, Martin T. Swain

Proceedings of the Fifth International Conference on e-Science, 2009

A standard-compliant global map of the bile acid/xenobiotic signaling network: Construction and automated query processing.

Oliver Schmidt, José López, Francisco Azuaje, Paul Thompson, Martin T. Swain, Werner Dubitzky

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Digging Deep into the Data Mine with DataMiningGrid.

Vlado Stankovski, Martin T. Swain, Valentin Kravtsov, Thomas Niessen, Dennis Wegener, M. Rohm, Jernej Trnkoczy, Michael May, Jürgen Franke, Assaf Schuster, Werner Dubitzky

IEEE Internet Comput., 2008

Grid-enabling data mining applications with DataMiningGrid: An architectural perspective.

Vlado Stankovski, Martin T. Swain, Valentin Kravtsov, Thomas Niessen, Dennis Wegener, Jörg Kindermann, Werner Dubitzky

Future Gener. Comput. Syst., 2008

Grid Computing Solutions for Distributed Repositories of Protein Folding and Unfolding Simulations.

Martin T. Swain, Vitaliy Ostropytskyy, Cândida G. Silva, Frederic T. Stahl, Olivier Riche, Rui M. M. Brito, Werner Dubitzky

Proceedings of the Computational Science, 2008

Comparing Grid Computing Solutions for Reverse-Engineering Gene Regulatory Networks.

Martin T. Swain, Johannes J. Mandel, Werner Dubitzky

Proceedings of the Computational Science, 2008

A Fast and Efficient Algorithm for Topology-Aware Coallocation.

Valentin Kravtsov, Martin T. Swain, Uri Dubin, Werner Dubitzky, Assaf Schuster

Proceedings of the Computational Science, 2008

2006

P-found: The Protein Folding and Unfolding Simulation Repository.

Cândida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin T. Swain, Werner Dubitzky, Rui M. M. Brito

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005

Predicting Peptide Interactions With Model Class II Mhc Structures.

Martin T. Swain, Anthony J. Brooks, Graham J. L. Kemp

Int. J. Artif. Intell. Tools, 2005

Modeling gene-regulatory networks using evolutionary algorithms and distributed computing.

Martin T. Swain, T. Hunniford, Johannes J. Mandel, Niall M. Palfreyman, Werner Dubitzky

Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

2002

Modelling Protein Side-chain Conformations using Constraint Logic Programming.

Martin T. Swain, Graham J. L. Kemp

Comput. Chem., 2002

2001

A CLP Approach to the Protein Side-Chain Placement Problem.

Martin T. Swain, Graham J. L. Kemp

Proceedings of the Principles and Practice of Constraint Programming, 2001

An Automated Approach to Modeling Class II MHC Alleles and Predicting Peptide Binding.

Martin T. Swain, Anthony J. Brooks, Graham J. L. Kemp

Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001