Martin Steinegger

According to our database, Martin Steinegger authored at least 19 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery.

Peter St. John, Dejun Lin, Polina Binder, Malcolm Greaves, Vega Shah, John St. John, Adrian Lange, Patrick Hsu, Rajesh Illango, Arvind Ramanathan, Anima Anandkumar, David H. Brookes, Akosua Busia, Abhishaike Mahajan, Stephen Malina, Neha Prasad, Sam Sinai, Lindsay Edwards, Thomas Gaudelet, Cristian Regep, Martin Steinegger, Burkhard Rost, Alexander Brace, Kyle Hippe, Luca Naef, Keisuke Kamata, George Armstrong, Kevin Boyd, Zhonglin Cao, Han-Yi Chou, Simon Chu, Allan dos Santos Costa, Sajad Darabi, Eric Dawson, Kieran Didi, Cong Fu, Mario Geiger, Michelle Gill, Darren Hsu, Gagan Kaushik, Maria Korshunova, Steven Kothen-Hill, Youhan Lee, Meng Liu, Micha Livne, Zachary McClure, Jonathan Mitchell, Alireza Moradzadeh, Ohad Mosafi, Youssef Nashed, Saee Paliwal, Yuxing Peng, Sara Rabhi, Farhad Ramezanghorbani, Danny Reidenbach, Camir Ricketts, Brian Roland, Kushal Shah, Tyler Shimko, Hassan Sirelkhatim, Savitha Srinivasan, Abraham C. Stern, Dorota Toczydlowska, Srimukh Prasad Veccham, Niccolò Alberto Elia Venanzi, Anton Vorontsov, Jared Wilber, Isabel Wilkinson, Wei Jing Wong, Eva Xue, Cory Ye, Xin Yu, Yang Zhang, Guoqing Zhou, Becca Zandstein, Christian Dallago, Bruno Trentini, Emine Küçükbenli, Timur Rvachov, Eddie Calleja, Johnny Israeli, Harry Clifford, Risto Haukioja, Nicholas Haemel, Kyle Tretina, Neha Tadimeti, Anthony B. Costa

CoRR, 2024

2023

Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices.

Daniel Liu, Martin Steinegger

Bioinform., August, 2023

Foldcomp: a library and format for compressing and indexing large protein structure sets.

Hyunbin Kim, Milot Mirdita, Martin Steinegger

Bioinform., April, 2023

UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi.

Dongwook Kim, Cameron L. M. Gilchrist, Jongsik Chun, Martin Steinegger

Nucleic Acids Res., January, 2023

2022

ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning.

Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost

IEEE Trans. Pattern Anal. Mach. Intell., 2022

Nearest neighbor search on embeddings rapidly identifies distant protein relations.

Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost

Frontiers Bioinform., 2022

PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.

Christopher Pockrandt, Martin Steinegger, Steven L. Salzberg

Bioinform., 2022

2021

DescribePROT: database of amino acid-level protein structure and function predictions.

Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan

Nucleic Acids Res., 2021

PredictProtein - Predicting Protein Structure and Function for 29 Years.

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost

Nucleic Acids Res., 2021

Fast and sensitive taxonomic assignment to metagenomic contigs.

Milot Mirdita, Martin Steinegger, Florian P. Breitwieser, Johannes Söding, Eli Levy Karin

Bioinform., 2021

2020

ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing.

Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost

CoRR, 2020

2019

HH-suite3 for fast remote homology detection and deep protein annotation.

Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding

BMC Bioinform., 2019

MMseqs2 desktop and local web server app for fast, interactive sequence searches.

Milot Mirdita, Martin Steinegger, Johannes Söding

Bioinform., 2019

2018

HFSP: high speed homology-driven function annotation of proteins.

Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg

Bioinform., 2018

2017

Uniclust databases of clustered and deeply annotated protein sequences and alignments.

Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger

Nucleic Acids Res., 2017

Updating lidar-derived crown cover density products with sentinel-2.

Janik Deutscher, Klaus Granica, Martin Steinegger, Manuela Hirschmugl, Roland Perko, Mathias Schardt

Proceedings of the 2017 IEEE International Geoscience and Remote Sensing Symposium, 2017

2016

MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.

Maria Hauser, Martin Steinegger, Johannes Söding

Bioinform., 2016

2015

Remote Sensing Based Two-Stage Sampling for Accuracy Assessment and Area Estimation of Land Cover Changes.

Heinz Gallaun, Martin Steinegger, Roland Wack, Mathias Schardt, Birgit Kornberger, Ursula Schmitt

Remote. Sens., 2015

2014

Mapping Forest Degradation due to Selective Logging by Means of Time Series Analysis: Case Studies in Central Africa.

Manuela Hirschmugl, Martin Steinegger, Heinz Gallaun, Mathias Schardt

Remote. Sens., 2014