Martin Romacker

Joachim Rupp

Proceedings of the ISWC 2017 Posters & Demonstrations and Industry Tracks co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 23rd - to, 2017

2016

Flexible data integration and curation using a graph-based approach.

[BibT_eX]

[DOI]

Samuel Croset

Joachim Rupp

Bioinform., 2016

Ontologies Guidelines and Evaluation of Ontologies Mapping Tools and Algorithms.

[BibT_eX]

[DOI]

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Ontologies Guidelines for Best Practice and a Process to Evaluate Existing Ontologies Mapping Tools and Algorithms.

[BibT_eX]

[DOI]

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

Introducing the disease and phenotype OAEI track.

[BibT_eX]

[DOI]

Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

2014

OntoGene web services for biomedical text mining.

[BibT_eX]

[DOI]

Raul Rodriguez-Esteban

BMC Bioinform., 2014

Evolving BioAssay Ontology (BAO): modularization, integration and applications.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2014

2013

Using the OntoGene pipeline for the triage task of BioCreative 2012.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2013

2011

The gene normalization task in BioCreative III.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

2010

OntoGene in BioCreative II.5.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2008

A Unified Conceptual Model for Representation of Terminologies and References of Terms across Data Repositories in Biomedicine.

[BibT_eX]

[DOI]

Angela Fahrni

Thérèse Vachon

Proceedings of the 2th IEEE International Conference on Semantic Computing (ICSC 2008), 2008

2006

An environment for relation mining over richly annotated corpora: the case of GENIA.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

Semantic Atomicity and Multilinguality in the Medical Domain: Design Considerations for the MorphoSaurus Subword Lexicon.

[BibT_eX]

[DOI]

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

2002

MedSynDikate - a natural language system for the extraction of medical information from findings reports.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2002

Creating Knowledge Repositories from Biomedical Reports: The MEDSYNDIKATE Text Mining System.

[BibT_eX]

[DOI]

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

MORPHOSAURUS: Crosslingual Medical Text Retrieval by Subword Indexing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

2001

Ebenen der Semantikintegration im Textverstehenssystem SYNDIKATE.

[BibT_eX]

[DOI]

PhD thesis, 2001

The SynDiKATe Text Knowledge Base Generator.

[BibT_eX]

[DOI]

Proceedings of the First International Conference on Human Language Technology Research, 2001

Computing in Formal Knowledge Base Contexts for Natural Language Ambiguity Resolution.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth International Florida Artificial Intelligence Research Society Conference, 2001

Context-Based Ambiguity Management for Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the Modeling and Using Context, 2001

Empirical data for the semantic interpretation of prepositional phrases in medical documents.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

Semantic Interpretation of Medical Language - Quantitative Analysis and Qualitative Yield.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence Medicine, 2001

2000

Content management in the SYNDIKATE system - How technical documents are automatically transformed to text knowledge bases.

[BibT_eX]

[DOI]

Data Knowl. Eng., 2000

On "deep" knowledge extraction from documents.

[BibT_eX]

[DOI]

Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2000

Coping with Different Types of Ambiguity Using a Uniform Context Handling Mechanism.

[BibT_eX]

[DOI]

Proceedings of the Natural Language Processing and Information Systems, 2000

An Integrated Model of Semantic and Conceptual Interpretation from Dependency Structures.

[BibT_eX]

[DOI]

Proceedings of the COLING 2000, 18th International Conference on Computational Linguistics, Proceedings of the Conference, 2 Volumes, July 31, 2000

An Empirical Assessment of Semantic Interpretation.

[BibT_eX]

[DOI]

Proceedings of the 6th Applied Natural Language Processing Conference, 2000

Modeling anatomical spatial relations with description logics.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

MedSynDiKATe-design considerations for an ontology-based medical text understanding system.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

1999

Discourse structures in medical reports - Watch out! The generation of referentially coherent and valid text knowledge bases in the medSYNDIKATE system.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 1999

Part-Whole Reasoning: A Case Study in Medical Ontology Engineering.

[BibT_eX]

[DOI]

IEEE Intell. Syst., 1999

How knowledge drives understandingmatching medical ontologies with the needs of medical language processing.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 1999

Towards a Multilingual Morpheme Thesaurus for Medical Free-Text Retrieval.

[BibT_eX]

[DOI]

Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Lean Semantic Interpretation.

[BibT_eX]

[DOI]

Katja Markert

Proceedings of the Sixteenth International Joint Conference on Artificial Intelligence, 1999

Text Understanding for Knowledge Base Generation in the SYNDIKATE System.

[BibT_eX]

[DOI]

Proceedings of the Database and Expert Systems Applications, 10th International Conference, 1999

Automatic Import and Manual Refinement of Medical Knowledge.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Streamlining semantic interpretation for medical narratives.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Small Is Beautiful - Compact Semantics for Medical Language Processing.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence in Medicine. Joint European Conference on Artificial Intelligence in Medicine and Medical Decision Making, 1999

Partonomic Reasoning as Taxonomic Reasoning in Medicine.

[BibT_eX]

[DOI]

Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999

1998

Automatische Erzeugung von medizinischen Wissensbasen durch partielles Textverstehen: Befundtextanalyse im MedSyndikate-System.

[BibT_eX]

Künstliche Intell., 1998

Why Discourse Structures in Medical Reports Matter for the Validity of Automatically Generated Text Knowledge Bases.

[BibT_eX]

[DOI]