Martin Morgan

According to our database, Martin Morgan authored at least 17 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management.

Qian Liu, Qiang Hu, Song Liu, Alan David Hutson, Martin Morgan

BMC Bioinform., December, 2024

2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron

PLoS Comput. Biol., 2023

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright

CoRR, 2023

2021

Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines.

Qiang Hu, Alan David Hutson, Song Liu, Martin Morgan, Qian Liu

Bioinform., 2021

Toward a gold standard for benchmarking gene set enrichment analysis.

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron

Briefings Bioinform., 2021

2020

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori A. Shepherd, Martin Morgan, Rob Patro

PLoS Comput. Biol., 2020

2019

BiocPkgTools: Toolkit for mining the<i> Bioconductor</i> package ecosystem.

Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis

F1000Research, 2019

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.

Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent J. Carey

F1000Research, 2019

gwasurvivr: an R package for genome-wide survival analysis.

Abbas A. Rizvi, Ezgi Karaesmen, Martin Morgan, Leah Preus, Junke Wang, Michael Sovic, Theresa Hahn, Lara E. Sucheston-Campbell

Bioinform., 2019

2018

Orchestrating a community-developed computational workshop and accompanying training materials.

Sean Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron

F1000Research, 2018

2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016

Genomic Annotation Resources in R/Bioconductor.

Marc Carlson, Hervé Pagès, Sonali Arora, Valerie Obenchain, Martin Morgan

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2014

Scalable Genomics with R and Bioconductor.

Michael F. Lawrence, Martin Morgan

CoRR, 2014

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.

Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan

Bioinform., 2014

2013

Software for Computing and Annotating Genomic Ranges.

Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey

PLoS Comput. Biol., 2013

2009

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.

Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman

Bioinform., 2009

2007

GGtools: analysis of genetics of gene expression in bioconductor.

Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman

Bioinform., 2007