Martin Kuiper
Orcid: 0000-0002-1171-9876
According to our database1,
Martin Kuiper
authored at least 51 papers
between 2005 and 2021.
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Bibliography
2021
Bioinform., 2021
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator.
Database J. Biol. Databases Curation, 2021
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.
Briefings Bioinform., 2021
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021
2020
emba: R package for analysis and visualization of biomarkers in boolean model ensembles.
J. Open Source Softw., 2020
A foundation for reference models for drug combinations with an application to Loewe's reference model.
BMC Bioinform., 2020
Bioinform., 2020
2019
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.
Bioinform., 2019
Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019
2016
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database J. Biol. Databases Curation, 2016
2015
PLoS Comput. Biol., 2015
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Syst. Biol., 2015
2014
Semantic Web, 2014
BMC Bioinform., 2014
Bioinform., 2014
Design of a Minimal System for Self-replication of Rectangular Patterns of DNA Tiles.
Proceedings of the Theory and Practice of Natural Computing, 2014
2013
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinform., 2013
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Database J. Biol. Databases Curation, 2013
Proceedings of the Theory and Practice of Natural Computing, 2013
2012
BMC Bioinform., 2012
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
2011
Reasoning with bio-ontologies: using relational closure rules to enable practical querying.
Bioinform., 2011
The RDF foundry: call for an initiative to build enhanced RDF resources for biological data integration.
Proceedings of the International Conference on Web Intelligence, Mining and Semantics, 2011
Semantic systems biology: enabling integrative biology via semantic web technologies.
Proceedings of the International Conference on Web Intelligence, Mining and Semantics, 2011
Proceedings of the Third International Conference on Intelligent Human Computer Interaction (IHCI 2011), 2011
2010
Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes.
J. Integr. Bioinform., 2010
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.
BMC Bioinform., 2010
DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data.
Bioinform., 2010
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010
2009
BMC Bioinform., 2009
Gene expression trends and protein features effectively complement each other in gene function prediction.
Bioinform., 2009
Briefings Bioinform., 2009
2008
BMC Syst. Biol., 2008
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.
BMC Bioinform., 2008
Bioinform., 2008
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
Structuring the Life Science Resourceome for Semantic Systems Biology: Lessons from the BioGateway Project.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
Proceedings of the Advances in Neuro-Information Processing, 15th International Conference, 2008
2007
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes.
BMC Bioinform., 2007
BMC Bioinform., 2007
2006
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006
2005
Simulating genetic networks made easy: network construction with simple building blocks.
Bioinform., 2005
<i>BiNGO</i>: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks.
Bioinform., 2005