Martin C. Herbordt

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

Further Optimizations and Analysis of Smith-Waterman with Vector Extensions.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

Performance Evaluation of VirtIO Device Drivers for Host-FPGA PCIe Communication.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

SmartFuse: Reconfigurable Smart Switches to Accelerate Fused Collectives in HPC Applications.

[BibT_eX]

[DOI]

Proceedings of the 38th ACM International Conference on Supercomputing, 2024

2023

Introduction to the Special Section on FCCM 2022.

[BibT_eX]

[DOI]

Jing Li

ACM Trans. Reconfigurable Technol. Syst., December, 2023

A Survey of Potential MPI Complex Collectives: Large-Scale Mining and Analysis of HPC Applications.

[BibT_eX]

[DOI]

CoRR, 2023

FASDA: An FPGA-Aided, Scalable and Distributed Accelerator for Range-Limited Molecular Dynamics.

[BibT_eX]

[DOI]

Proceedings of the International Conference for High Performance Computing, 2023

FLASH: FPGA-Accelerated Smart Switches with GCN Case Study.

[BibT_eX]

[DOI]

Proceedings of the 37th International Conference on Supercomputing, 2023

Software-Hardware Co-design of Heterogeneous SmartNIC System for Recommendation Models Inference and Training.

[BibT_eX]

[DOI]

Proceedings of the 37th International Conference on Supercomputing, 2023

Improved Models for Policy-Agent Learning of Compiler Directives in HLS.

[BibT_eX]

[DOI]

Proceedings of the IEEE High Performance Extreme Computing Conference, 2023

2022

The Future of FPGA Acceleration in Datacenters and the Cloud.

[BibT_eX]

[DOI]

ACM Trans. Reconfigurable Technol. Syst., 2022

Reconfigurable switches for high performance and flexible MPI collectives.

[BibT_eX]

[DOI]

Concurr. Comput. Pract. Exp., 2022

Reinforcement Learning Strategies for Compiler Optimization in High level Synthesis.

[BibT_eX]

[DOI]

Proceedings of the Eighth IEEE/ACM Workshop on the LLVM Compiler Infrastructure in HPC, 2022

Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework.

[BibT_eX]

[DOI]

Proceedings of the IEEE High Performance Extreme Computing Conference, 2022

The Viability of Using Online Prediction to Perform Extra Work while Executing BSP Applications.

[BibT_eX]

[DOI]

Proceedings of the IEEE High Performance Extreme Computing Conference, 2022

Enabling VirtIO Driver Support on FPGAs.

[BibT_eX]

[DOI]

Proceedings of the IEEE/ACM International Workshop on Heterogeneous High-performance Reconfigurable Computing, 2022

Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs.

[BibT_eX]

[DOI]

Proceedings of the 32nd International Conference on Field-Programmable Logic and Applications, 2022

A Framework for Neural Network Inference on FPGA-Centric SmartNICs.

[BibT_eX]

[DOI]

Proceedings of the 32nd International Conference on Field-Programmable Logic and Applications, 2022

H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture.

[BibT_eX]

[DOI]

Proceedings of the 32nd International Conference on Field-Programmable Logic and Applications, 2022

COPA Use Case: Distributed Secure Joint Computation.

[BibT_eX]

[DOI]

Proceedings of the 30th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2022

FCsN: A FPGA-Centric SmartNIC Framework for Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the 30th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2022

2021

O3BNN-R: An Out-of-Order Architecture for High-Performance and Regularized BNN Inference.

[BibT_eX]

[DOI]

IEEE Trans. Parallel Distributed Syst., 2021

I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization.

[BibT_eX]

[DOI]

Proceedings of the MICRO '21: 54th Annual IEEE/ACM International Symposium on Microarchitecture, 2021

System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations.

[BibT_eX]

[DOI]

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Survey and Future Trends for FPGA Cloud Architectures.

[BibT_eX]

[DOI]

Hafsah Shahzad

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Workload Imbalance in HPC Applications: Effect on Performance of In-Network Processing.

[BibT_eX]

[DOI]

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

A Survey: Handling Irregularities in Neural Network Acceleration with FPGAs.

[BibT_eX]

[DOI]

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors.

[BibT_eX]

[DOI]

Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster.

[BibT_eX]

[DOI]

Proceedings of the 29th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2021

The Open Cloud Testbed (OCT): A Platform for Research into new Cloud Technologies.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Conference on Cloud Networking, CloudNet 2021, 2021

2020

FPDeep: Scalable Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters.

[BibT_eX]

[DOI]

IEEE Trans. Computers, 2020

An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs.

[BibT_eX]

[DOI]

CoRR, 2020

AWB-GCN: A Graph Convolutional Network Accelerator with Runtime Workload Rebalancing.

[BibT_eX]

[DOI]

Proceedings of the 53rd Annual IEEE/ACM International Symposium on Microarchitecture, 2020

CSB-RNN: a faster-than-realtime RNN acceleration framework with compressed structured blocks.

[BibT_eX]

[DOI]

Proceedings of the ICS '20: 2020 International Conference on Supercomputing, 2020

A Reconfigurable Compute-in-the-Network FPGA Assistant for High-Level Collective Support with Distributed Matrix Multiply Case Study.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Field-Programmable Technology, 2020

A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

Arithmetic and Boolean Secret Sharing MPC on FPGAs in the Data Center.

[BibT_eX]

[DOI]

Rushi Patel

Pierre-Francois Wolfe

Robert Munafo

Mayank Varia

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

FPGAs in the Network and Novel Communicator Support Accelerate MPI Collectives.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

CQNN: a CGRA-based QNN Framework.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE High Performance Extreme Computing Conference, 2020

Secret Sharing MPC on FPGAs in the Datacenter.

[BibT_eX]

[DOI]

Pierre-Francois Wolfe

Proceedings of the 30th International Conference on Field-Programmable Logic and Applications, 2020

Accelerating MPI Collectives with FPGAs in the Network and Novel Communicator Support.

[BibT_eX]

[DOI]

Proceedings of the 28th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2020

FP-AMG: FPGA-Based Acceleration Framework for Algebraic Multigrid Solvers.

[BibT_eX]

[DOI]

Proceedings of the 28th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2020

2019

UWB-GCN: Hardware Acceleration of Graph-Convolution-Network through Runtime Workload Rebalancing.

[BibT_eX]

[DOI]

CoRR, 2019

Fully Integrated On-FPGA Molecular Dynamics Simulations.

[BibT_eX]

[DOI]

CoRR, 2019

A Scalable Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Weight and Workload Balancing.

[BibT_eX]

[DOI]

CoRR, 2019

Fully integrated FPGA molecular dynamics simulations.

[BibT_eX]

[DOI]

Proceedings of the International Conference for High Performance Computing, 2019

BSTC: a novel binarized-soft-tensor-core design for accelerating bit-based approximated neural nets.

[BibT_eX]

[DOI]

Proceedings of the International Conference for High Performance Computing, 2019

O3BNN: an out-of-order architecture for high-performance binarized neural network inference with fine-grained pruning.

[BibT_eX]

[DOI]

Proceedings of the ACM International Conference on Supercomputing, 2019

GhostSZ: A Transparent FPGA-Accelerated Lossy Compression Framework.

[BibT_eX]

[DOI]

Proceedings of the 27th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2019

FP-AMR: A Reconfigurable Fabric Framework for Adaptive Mesh Refinement Applications.

[BibT_eX]

[DOI]

Proceedings of the 27th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2019

Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs.

[BibT_eX]

[DOI]

Proceedings of the 30th IEEE International Conference on Application-specific Systems, 2019

Accelerating AP3M-Based Computational Astrophysics Simulations with Reconfigurable Clusters.

[BibT_eX]

[DOI]

Proceedings of the 30th IEEE International Conference on Application-specific Systems, 2019

LP-BNN: Ultra-low-Latency BNN Inference with Layer Parallelism.

[BibT_eX]

[DOI]

Proceedings of the 30th IEEE International Conference on Application-specific Systems, 2019

2018

Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

MPI Derived Datatypes: Performance and Portability Issues.

[BibT_eX]

[DOI]

Qingqing Xiong

Purushotham V. Bangalore

Anthony Skjellum

Proceedings of the 25th European MPI Users' Group Meeting, 2018

Tangram: Colocating HPC Applications with Oversubscription.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Soft-Core. Multiple-Lane, FPGA-based ADCs for a Liquid Helium Environment.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Application Aware Tuning of Reconfigurable Multi-Layer Perceptron Architectures.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Unlocking Performance-Programmability by Penetrating the Intel FPGA OpenCL Toolflow.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

Benchmarking Heterogeneous HPC Systems Including Reconfigurable Fabrics: Community Aspirations for Ideal Comparisons.

[BibT_eX]

[DOI]

Peter Jamieson

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

An Access-Pattern-Aware On-Chip Vector Memory System with Automatic Loading for SIMD Architectures.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

FPGA HPC using OpenCL: Case Study in 3D FFT.

[BibT_eX]

[DOI]

Proceedings of the 9th International Symposium on Highly-Efficient Accelerators and Reconfigurable Technologies, 2018

An Empirically Guided Optimization Framework for FPGA OpenCL.

[BibT_eX]

[DOI]

Rushi Patel

Proceedings of the International Conference on Field-Programmable Technology, 2018

Accelerating MPI Message Matching through FPGA Offload.

[BibT_eX]

[DOI]

Qingqing Xiong

Anthony Skjellum

Proceedings of the 28th International Conference on Field Programmable Logic and Applications, 2018

High Performance Communication on Reconfigurable Clusters.

[BibT_eX]

[DOI]

Jiayi Sheng

Chen Yang

Proceedings of the 28th International Conference on Field Programmable Logic and Applications, 2018

A Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Work and Weight Load Balancing.

[BibT_eX]

[DOI]

Proceedings of the 28th International Conference on Field Programmable Logic and Applications, 2018

High Performance Dynamic Communication on Reconfigurable Clusters.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2018

FPDeep: Acceleration and Load Balancing of CNN Training on FPGA Clusters.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2018

2017

An FPGA-based data acquisition system for directional dark matter detection.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

OpenCL for HPC with FPGAs: Case study in molecular electrostatics.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

HPC on FPGA clouds: 3D FFTs and implications for molecular dynamics.

[BibT_eX]

[DOI]

Proceedings of the 27th International Conference on Field Programmable Logic and Applications, 2017

Bonded Force Computations on FPGAs.

[BibT_eX]

[DOI]

Qingqing Xiong

Proceedings of the 25th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2017

2016

Collective Communication on FPGA Clusters with Static Scheduling.

[BibT_eX]

[DOI]

SIGARCH Comput. Archit. News, 2016

Communication and cooling aware job allocation in data centers for communication-intensive workloads.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2016

GPU-accelerated charge mapping.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE High Performance Extreme Computing Conference, 2016

A hardware design for in-brain neural spike sorting.

[BibT_eX]

[DOI]

Yinan Liu

Jiayi Sheng

Proceedings of the 2016 IEEE High Performance Extreme Computing Conference, 2016

Novo-G#: Large-scale reconfigurable computing with direct and programmable interconnects.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE High Performance Extreme Computing Conference, 2016

Application-Aware Collective Communication (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the 24th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2016

FPGA-Accelerated Particle-Grid Mapping.

[BibT_eX]

[DOI]

Arash Khoshparvar

Proceedings of the 24th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2016

2015

NCBI BLASTP on High-Performance Reconfigurable Computing Systems.

[BibT_eX]

[DOI]

ACM Trans. Reconfigurable Technol. Syst., 2015

Hardware-efficient compressed sensing encoder designs for WBSNs.

[BibT_eX]

[DOI]

Jiayi Sheng

Chen Yang

Proceedings of the 2015 IEEE High Performance Extreme Computing Conference, 2015

2014

Design of 3D FFTs with FPGA clusters.

[BibT_eX]

[DOI]

Proceedings of the IEEE High Performance Extreme Computing Conference, 2014

An investigation of Unified Memory Access performance in CUDA.

[BibT_eX]

[DOI]

Proceedings of the IEEE High Performance Extreme Computing Conference, 2014

GPU optimizations for a production molecular docking code.

[BibT_eX]

[DOI]

Raphael Landaverde

Proceedings of the IEEE High Performance Extreme Computing Conference, 2014

3D FFTs on a Single FPGA.

[BibT_eX]

[DOI]

Proceedings of the 22nd IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2014

Increasing Parallelism and Reducing Thread Contentions in Mapping Localized N-Body Simulations to GPUs.

[BibT_eX]

[DOI]

Proceedings of the Numerical Computations with GPUs, 2014

2013

NCBI BLASTP on the convey HC1-EX.

[BibT_eX]

[DOI]

SIGARCH Comput. Archit. News, 2013

3D FFT for FPGAs.

[BibT_eX]

[DOI]

Ben Humphries

Proceedings of the IEEE High Performance Extreme Computing Conference, 2013

Architecture/algorithm codesign of molecular dynamics processors.

[BibT_eX]

[DOI]

Proceedings of the 2013 Asilomar Conference on Signals, 2013

2012

CAAD BLASTP 2.0: NCBI BLASTP accelerated with pipelined filters.

[BibT_eX]

[DOI]

Proceedings of the 22nd International Conference on Field Programmable Logic and Applications (FPL), 2012

FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE 20th Annual International Symposium on Field-Programmable Custom Computing Machines, 2012

2011

Parallel discrete molecular dynamics simulation with speculation and in-order commitment.

[BibT_eX]

[DOI]

J. Comput. Phys., 2011

Software optimization for performance, energy, and thermal distribution: Initial case studies.

[BibT_eX]

[DOI]

Can Hankendi

Ayse Kivilcim Coskun

Proceedings of the 2011 International Green Computing Conference and Workshops, 2011

Efficient Calculation of Pairwise Nonbonded Forces.

[BibT_eX]

[DOI]

Proceedings of the IEEE 19th Annual International Symposium on Field-Programmable Custom Computing Machines, 2011

2010

Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems.

[BibT_eX]

[DOI]

ACM Trans. Reconfigurable Technol. Syst., 2010

FPGA acceleration of rigid-molecule docking codes.

[BibT_eX]

[DOI]

IET Comput. Digit. Tech., 2010

Towards production FPGA-accelerated molecular dynamics: Progress and challenges.

[BibT_eX]

[DOI]

Proceedings of the 2010 Fourth International Workshop on High-Performance Reconfigurable Computing Technology and Applications, 2010

CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering.

[BibT_eX]

[DOI]

Jin H. Park

Yunfei Qiu

Proceedings of the International Symposium on Circuits and Systems (ISCAS 2010), May 30, 2010

Fast binding site mapping using GPUs and CUDA.

[BibT_eX]

[DOI]

Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering.

[BibT_eX]

[DOI]

Proceedings of the 24th International Conference on Supercomputing, 2010

2009

Elements of High-Performance Reconfigurable Computing.

[BibT_eX]

[DOI]

Adv. Comput., 2009

FPGA-based acceleration of CHARMM-potential minimization.

[BibT_eX]

[DOI]

Proceedings of the Third International Workshop on High-Performance Reconfigurable Computing Technology and Applications, 2009

Efficient particle-pair filtering for acceleration of molecular dynamics simulation.

[BibT_eX]

[DOI]

Proceedings of the 19th International Conference on Field Programmable Logic and Applications, 2009

CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering.

[BibT_eX]

[DOI]

Jin H. Park

Yunfei Qiu

Proceedings of the FCCM 2009, 2009

GPU acceleration of a production molecular docking code.

[BibT_eX]

[DOI]

Proceedings of 2nd Workshop on General Purpose Processing on Graphics Processing Units, 2009

Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition.

[BibT_eX]

[DOI]

Tony Dean

Proceedings of the 20th IEEE International Conference on Application-Specific Systems, 2009

2008

Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations.

[BibT_eX]

[DOI]

Parallel Comput., 2008

Computing Models for FPGA-Based Accelerators.

[BibT_eX]

[DOI]

Comput. Sci. Eng., 2008

Performance potential of molecular dynamics simulations on high performance reconfigurable computing systems.

[BibT_eX]

[DOI]

Martin Langhammer

Proceedings of the 2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications, 2008

Acceleration of a production rigid molecule docking code.

[BibT_eX]

[DOI]

Proceedings of the FPL 2008, 2008

An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics.

[BibT_eX]

[DOI]

Francois Kosie

Josh Model

Proceedings of the 16th IEEE International Symposium on Field-Programmable Custom Computing Machines, 2008

2007

Single pass streaming BLAST on FPGAs.

[BibT_eX]

[DOI]

Parallel Comput., 2007

Families of FPGA-based accelerators for approximate string matching.

[BibT_eX]

[DOI]

Microprocess. Microsystems, 2007

Achieving High Performance with FPGA-Based Computing.

[BibT_eX]

[DOI]

Computer, 2007

Discrete Event Simulation of Molecular Dynamics with Configurable Logic.

[BibT_eX]

[DOI]

Josh Model

Proceedings of the FPL 2007, 2007

FPGA-Based Multigrid Computation for Molecular Dynamics Simulations.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium on Field-Programmable Custom Computing Machines, 2007

2006

Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws.

[BibT_eX]

[DOI]

EURASIP J. Adv. Signal Process., 2006

Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations.

[BibT_eX]

[DOI]

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

Sizing of Processing Arrays for FPGA-Based Computation.

[BibT_eX]

[DOI]

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique.

[BibT_eX]

[DOI]

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

Single Pass, BLAST-Like, Approximate String Matching on FPGAs.

[BibT_eX]

[DOI]

Proceedings of the 14th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2006), 2006

Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report.

[BibT_eX]

[DOI]

Proceedings of the 14th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2006), 2006

Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations.

[BibT_eX]

[DOI]

Proceedings of the 14th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2006), 2006

2005

Accelerating Molecular Dynamics Simulations With Configurable Circuits.

[BibT_eX]

[DOI]

Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005

LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators.

[BibT_eX]

[DOI]

Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005

Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations.

[BibT_eX]

[DOI]

Proceedings of the 13th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2005), 2005

Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data.

[BibT_eX]

[DOI]

Proceedings of the Seventh International Workshop on Computer Architectures for Machine Perception (CAMP 2005), 2005

2004

Case study of a functional genomics application for an FPGA-based coprocessor.

[BibT_eX]

[DOI]

Richard J. Barton

Microprocess. Microsystems, 2004

Array control for high-performance SIMD systems.

[BibT_eX]

[DOI]

Jade Cravy

Honghai Zhang

J. Parallel Distributed Comput., 2004

Processing Repetitive Sequence Structures with Mismatches at Streaming Rate.

[BibT_eX]

[DOI]

Albert A. Conti

Proceedings of the Field Programmable Logic and Application, 2004

FPGA Acceleration of Rigid Molecule Interactions.

[BibT_eX]

[DOI]

Proceedings of the 12th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2004), 2004

Families of FPGA-Based Algorithms for Approximate String Matching.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Conference on Application-Specific Systems, 2004

2003

Case Study of a Functional Genomics Application.

[BibT_eX]

[DOI]

Richard J. Barton

Proceedings of the Field Programmable Logic and Application, 13th International Conference, 2003

2000

A System for Evaluating Performance and Cost of SIMD Array Designs.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2000

An Array Control Unit for High Performance SIMD Arrays.

[BibT_eX]

[DOI]

Proceedings of the Fifth International Workshop on Computer Architectures for Machine Perception (CAMP 2000), 2000

Control for High-Speed PE Arrays.

[BibT_eX]

[DOI]

Proceedings of the 12th IEEE International Conference on Application-Specific Systems, 2000

1999

Using Emulations to Enhance the Performance of Parallel Architectures.

[BibT_eX]

[DOI]

IEEE Trans. Parallel Distributed Syst., 1999

1997

Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation.

[BibT_eX]

[DOI]

Owais Kidwai

Proceedings of the 1997 ACM SIGMETRICS international conference on Measurement and modeling of computer systems, 1997

1995

Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications.

[BibT_eX]

[DOI]

Int. J. Pattern Recognit. Artif. Intell., 1995

Experimental Analysis of Some SIMD Array Memory Hierarchies.

[BibT_eX]

Proceedings of the 1995 International Conference on Parallel Processing, 1995

An empirical study of datapath, memory hierarchy, and network in SIMD array architectures.

[BibT_eX]

[DOI]

Proceedings of the 1995 International Conference on Computer Design (ICCD '95), 1995

1994

Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 1994

1992

Nonuniform region processing on SIMD arrays using the coterie network.

[BibT_eX]

[DOI]

Michael J. Scudder

Mach. Vis. Appl., 1992

1991

Message-passing algorithms for a SIMD torus with coteries.

[BibT_eX]

[DOI]

James C. Corbett

SIGARCH Comput. Archit. News, 1991

Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays.

[BibT_eX]

Proceedings of the International Conference on Parallel Processing, 1991

A computational framework and SIMD algorithms for low-level support of intermediate level vision processing.

[BibT_eX]

[DOI]

Michael J. Scudder

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1991

1990

Routing on the CAAPP.

[BibT_eX]

[DOI]