Martin C. Frith

According to our database, Martin C. Frith authored at least 30 papers between 1998 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The Statistics of Parametrized Syncmers in a Simple Mutation Process Without Spurious Matches.

John L. Spouge, Pijush Das, Ye Chen, Martin C. Frith

J. Comput. Biol., 2024

2023

How to optimally sample a sequence for rapid analysis.

Martin C. Frith, Jim Shaw, John L. Spouge

Bioinform., February, 2023

Improved DNA-Versus-Protein Homology Search for Protein Fossils.

Yin Yao, Martin C. Frith

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2021

Minimally overlapping words for sequence similarity search.

Martin C. Frith, Laurent Noé, Gregory Kucherov

Bioinform., 2021

2020

How sequence alignment scores correspond to probability models.

Martin C. Frith

Bioinform., 2020

2018

A Simplified Description of Child Tables for Sequence Similarity Search.

Martin C. Frith, Anish Man Singh Shrestha

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017

Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads.

Thomas M. Poulsen, Martin C. Frith

BMC Bioinform., 2017

Training alignment parameters for arbitrary sequencers with LAST-TRAIN.

Michiaki Hamada, Yukiteru Ono, Kiyoshi Asai, Martin C. Frith

Bioinform., 2017

2016

ALP & FALP: C++ libraries for pairwise local alignment <i>E</i>-values.

Sergey Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge

Bioinform., 2016

2015

A Genetic Algorithm for Motif Finding Based on Statistical Significance.

Josep Basha Gutierrez, Martin C. Frith, Kenta Nakai

Proceedings of the Bioinformatics and Biomedical Engineering, 2015

2014

A promoter-level mammalian expression atlas.

The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. M. Semple, Yuri Ishizu, Robert S. Young, Margherita Francescatto, Intikhab Alam, Davide Albanese, Gabriel M. Altschuler, Takahiro Arakawa, John A. C. Archer, Peter Arner, Magda Babina, Sarah Rennie, Piotr J. Balwierz, Anthony G. Beckhouse, Swati Pradhan-Bhatt, Judith A. Blake, Antje Blumenthal, Beatrice Bodega, Alessandro Bonetti, James Briggs, Frank Brombacher, A. Maxwell Burroughs, Andrea Califano, Carlo V. Cannistraci, Daniel Carbajo, Yun Chen, Marco Chierici, Yari Ciani, Hans Clevers, Emiliano Dalla, Carrie A. Davis, Michael Detmar, Alexander D. Diehl, Taeko Dohi, Finn Drabløs, Albert S. B. Edge, Matthias Edinger, Karl Ekwall, Mitsuhiro Endoh, Hideki Enomoto, Michela Fagiolini, Lynsey Fairbairn, Hai Fang, Mary C. Farach-Carson, Geoffrey J. Faulkner, Alexander V. Favorov, Malcolm E. Fisher, Martin C. Frith, Rie Fujita, Shiro Fukuda, Cesare Furlanello, Masaaki Furuno, Jun-ichi Furusawa, Teunis B. Geijtenbeek, Andrew P. Gibson, Thomas R. Gingeras, Daniel Goldowitz, Julian Gough, Sven Guhl, Reto Guler, Stefano Gustincich, Thomas J. Ha, Masahide Hamaguchi, Mitsuko Hara, Matthias Harbers, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Takehiro Hashimoto, Meenhard Herlyn, Kelly J. Hitchens, Shannan J. Ho Sui, Oliver M. Hofmann, Ilka Hoof, Fumi Hori, Lukasz Huminiecki, Kei Iida, Tomokatsu Ikawa, Boris R. Jankovic, Hui Jia, Anagha Joshi, Giuseppe Jurman, Bogumil Kaczkowski, Chieko Kai, Kaoru Kaida, Ai Kaiho, Kazuhiro Kajiyama, Mutsumi Kanamori-Katayama, Artem S. Kasianov, Takeya Kasukawa, Shintaro Katayama, Sachi Kato, Shuji Kawaguchi, Hiroshi Kawamoto, Yuki I. Kawamura, Tsugumi Kawashima, Judith S. Kempfle, Tony J. Kenna, Juha Kere, Levon M. Khachigian, Toshio Kitamura, S. Peter Klinken, Alan J. Knox, Miki Kojima, Soichi Kojima, Naoto Kondo, Haruhiko Koseki, Shigeo Koyasu, Sarah Krampitz, Atsutaka Kubosaki, Andrew T. Kwon, Jeroen F. J. Laros, Weonju Lee, Andreas Lennartsson, Kang Li, Berit Lilje, Leonard Lipovich, Alan Mackay-Sim, Ri-ichiroh Manabe, Jessica Cara Mar, Benoit Marchand, Anthony Mathelier, Niklas Mejhert, Alison M. Meynert, Yosuke Mizuno, David A. de Lima Morais, Hiromasa Morikawa, Mitsuru Morimoto, Kazuyo Moro, Efthymios Motakis, Hozumi Motohashi, Christine Mummery, Mitsuyoshi Murata, Sayaka Nagao-Sato, Yutaka Nakachi, Fumio Nakahara, Toshiyuki Nakamura, Yukio Nakamura, Kenichi Nakazato, Erik van Nimwegen, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Tadasuke Nozaki, Soichi Ogishima, Naganari Ohkura, Hiroko Ohmiya, Hiroshi Ohno, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Yasushi Okazaki, Valerio Orlando, Dmitry A. Ovchinnikov, Arnab Pain, Robert Passier, Margaret Patrikakis, Helena Persson, Silvano Piazza, James G. D. Prendergast, Owen J. L. Rackham, Jordan A. Ramilowski, Mamoon Rashid, Timothy Ravasi, Patrizia Rizzu, Marco Roncador, Sugata Roy, Morten B. Rye, Eri Saijyo, Antti Sajantila, Akiko Saka, Shimon Sakaguchi, Mizuho Sakai, Hiroki Sato, Hironori Sato, Suzana Savvi, Alka Saxena, Claudio Schneider, Erik A. Schultes, Gundula G. Schulze-Tanzil, Anita Schwegmann, Thierry Sengstag, Guojun Sheng, Hisashi Shimoji, Yishai Shimoni, Jay W. Shin, Christophe Simon, Daisuke Sugiyama, Takaaki Sugiyama, Masanori Suzuki, Naoko Suzuki, Rolf K. Swoboda, Peter A. C. 't Hoen, Michihira Tagami, Naoko Takahashi, Jun Takai, Hiroshi Tanaka, Hideki Tatsukawa, Zuotian Tatum, Mark Thompson, Hiroo Toyoda, Tetsuro Toyoda, Eivind Valen, Marc van de Wetering, Linda M. van den Berg, Roberto Verardo, Dipti Vijayan, Ilya E. Vorontsov, Wyeth W. Wasserman, Shoko Watanabe, Christine A. Wells, Louise N. Winteringham, Ernst Wolvetang, Emily J. Wood, Yoko Yamaguchi, Masayuki Yamamoto, Misako Yoneda, Yohei Yonekura, Shigehiro Yoshida, Susan E. Zabierowski, Peter G. Zhang, Xiaobei Zhao, Silvia Zucchelli, Kim M. Summers, Harukazu Suzuki, Carsten O. Daub, Jun Kawai, Peter Heutink, Winston Hide, Tom C. Freeman, Boris Lenhard, Vladimir B. Bajic, Martin S. Taylor, Vsevolod J. Makeev, Albin Sandelin, David A. Hume, Piero Carninci, Yoshihide Hayashizaki

Nat., 2014

Frameshift alignment: statistics and post-genomic applications.

Sergey L. Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge

Bioinform., 2014

A bioinformatician's guide to the forefront of suffix array construction algorithms.

Anish Man Singh Shrestha, Martin C. Frith, Paul Horton

Briefings Bioinform., 2014

2013

An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome.

Anish Man Singh Shrestha, Martin C. Frith

Bioinform., 2013

2012

RecountDB: a database of mapped and count corrected transcribed sequences.

Edward Wijaya, Martin C. Frith, Kiyoshi Asai, Paul Horton

Nucleic Acids Res., 2012

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

Kazutaka Katoh, Martin C. Frith

Bioinform., 2012

2011

CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.

Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C. Frith, Kiyoshi Asai

Nucleic Acids Res., 2011

Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.

Michiaki Hamada, Edward Wijaya, Martin C. Frith, Kiyoshi Asai

Bioinform., 2011

2010

Parameters for accurate genome alignment.

Martin C. Frith, Michiaki Hamada, Paul Horton

BMC Bioinform., 2010

In search of true reads: A classification approach to next generation sequencing data selection.

Edward Wijaya, Jean-François Pessiot, Martin C. Frith, Wataru Fujibuchi, Kiyoshi Asai, Paul Horton

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

MEME SUITE: tools for motif discovery and searching.

Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin C. Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble

Nucleic Acids Res., 2009

2008

Discovering Sequence Motifs with Arbitrary Insertions and Deletions.

Martin C. Frith, Neil F. W. Saunders, Bostjan Kobe, Timothy L. Bailey

PLoS Comput. Biol., 2008

2007

Large-scale clustering of CAGE tag expression data.

Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, Martin C. Frith, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki

BMC Bioinform., 2007

2004

CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.

Peter M. Haverty, Martin C. Frith, Zhiping Weng

Nucleic Acids Res., 2004

MotifViz: an analysis and visualization tool for motif discovery.

Yutao Fu, Martin C. Frith, Peter M. Haverty, Zhiping Weng

Nucleic Acids Res., 2004

2003

Cluster-Buster: finding dense clusters of motifs in DNA sequences.

Martin C. Frith, Michael C. Li, Zhiping Weng

Nucleic Acids Res., 2003

Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence.

Yvonne J. K. Edwards, Tim J. Carver, Tanya Vavouri, Martin C. Frith, Martin J. Bishop, Greg Elgar

Nucleic Acids Res., 2003

SeqVISTA: a graphical tool for sequence feature visualization and comparison.

Zhenjun Hu, Martin C. Frith, Tianhua Niu, Zhiping Weng

BMC Bioinform., 2003

2001

Detection of cis -element clusters in higher eukaryotic DNA.

Martin C. Frith, Ulla Hansen, Zhiping Weng

Bioinform., 2001

1998

Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences.

Yvonne J. K. Edwards, Martin C. Frith, Greg Elgar, Martin J. Bishop

Proceedings of the German Conference on Bioinformatics, 1998