Martijn P. van Iersel

According to our database, Martijn P. van Iersel authored at least 19 papers between 2008 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

The systems biology format converter.

Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon, Kedar Nath Natarajan, David Tolnay, Melanie I. Stefan, Chris T. A. Evelo, Nicolas Le Novère

BMC Bioinform., 2016

2015

PathVisio 3: An Extendable Pathway Analysis Toolbox.

Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico, Chris T. A. Evelo

PLoS Comput. Biol., 2015

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.

Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar

J. Integr. Bioinform., 2015

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment.

Anwesha Bohler, Lars M. T. Eijssen, Martijn P. van Iersel, Christ Leemans, Egon L. Willighagen, Martina Kutmon, Magali Jaillard, Chris T. A. Evelo

BMC Bioinform., 2015

2014

Integrated Visualization of a Multi-omics Study of Starvation in Mouse Intestine.

Martijn P. van Iersel, Milka Sokolovic, Kaatje Lenaerts, Martina Kutmon, Freek G. Bouwman, Wouter H. Lamers, Edwin C. M. Mariman, Chris T. A. Evelo

J. Integr. Bioinform., 2014

BridgeDb app: unifying identifier mapping services for Cytoscape.

Jianjiong Gao, Chao Zhang, Martijn P. van Iersel, Li Zhang, Dong Xu, Nikolaus Schultz, Alexander R. Pico

F1000Research, 2014

2013

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar

BMC Syst. Biol., 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.

Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère

BMC Syst. Biol., 2013

CySBGN: A Cytoscape plug-in to integrate SBGN maps.

Emanuel J. V. Gonçalves, Martijn P. van Iersel, Julio Saez-Rodriguez

BMC Bioinform., 2013

PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways.

Jake Y. Fried, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna

Bioinform., 2013

Linked Data Services for Scientists Exemplified Using Drosophila Melanogaster Datasets.

Martijn P. van Iersel, Nadia Anwar, Liz Reynolds

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012

WikiPathways: building research communities on biological pathways.

Thomas Kelder, Martijn P. van Iersel, Kristina Hanspers, Martina Kutmon, Bruce R. Conklin, Chris T. A. Evelo, Alexander R. Pico

Nucleic Acids Res., 2012

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.

Camille Terfve, Thomas Cokelaer, David Henriques, Aidan MacNamara, Emanuel J. V. Gonçalves, Melody K. Morris, Martijn P. van Iersel, Douglas A. Lauffenburger, Julio Saez-Rodriguez

BMC Syst. Biol., 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.

Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber

Bioinform., 2012

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.

Kumar Chandan, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna

Bioinform., 2012

Flexible Integration and Visualisation of Drosophila Melanogaster Datasets.

Martijn P. van Iersel, Julian A. T. Dow, Nadia Anwar

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011

PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).

Augustin Luna, Margot Sunshine, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn

Bioinform., 2011

2010

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.

Martijn P. van Iersel, Alexander R. Pico, Thomas Kelder, Jianjiong Gao, Isaac Ho, Kristina Hanspers, Bruce R. Conklin, Chris T. A. Evelo

BMC Bioinform., 2010

2008

Presenting and exploring biological pathways with PathVisio.

Martijn P. van Iersel, Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Susan L. Coort, Bruce R. Conklin, Chris T. A. Evelo

BMC Bioinform., 2008