Martijn J. Schuemie

Orcid: 0000-0002-0817-5361

According to our database1, Martijn J. Schuemie authored at least 54 papers between 1999 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
OHDSI Standardized Vocabularies - a large-scale centralized reference ontology for international data harmonization.
J. Am. Medical Informatics Assoc., February, 2024

Massive Parallelization of Massive Sample-Size Survival Analysis.
J. Comput. Graph. Stat., 2024

2023
European Health Data & Evidence Network - learnings from building out a standardized international health data network.
J. Am. Medical Informatics Assoc., December, 2023

Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.
J. Biomed. Informatics, September, 2023

Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022
Learning patient-level prediction models across multiple healthcare databases: evaluation of ensembles for increasing model transportability.
BMC Medical Informatics Decis. Mak., 2022

Adjusting for indirectly measured confounding using large-scale propensity score.
J. Biomed. Informatics, 2022

PheValuator 2.0: Methodological improvements for the PheValuator approach to semi-automated phenotype algorithm evaluation.
J. Biomed. Informatics, 2022

dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling.
J. Am. Medical Informatics Assoc., 2022

2021
An empirical analysis of dealing with patients who are lost to follow-up when developing prognostic models using a cohort design.
BMC Medical Informatics Decis. Mak., 2021

Design matters in patient-level prediction: evaluation of a cohort vs. case-control design when developing predictive models in observational healthcare datasets.
J. Big Data, 2021

Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study.
J. Am. Medical Informatics Assoc., 2021

A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data.
Comput. Methods Programs Biomed., 2021

2020
Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND).
J. Am. Medical Informatics Assoc., 2020

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study.
J. Am. Medical Informatics Assoc., 2020

Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.
J. Am. Medical Informatics Assoc., 2020

Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm.
J. Am. Medical Informatics Assoc., 2020

Causal Inference from Observational Healthcare Data: Implications, Impacts and Innovations.
Proceedings of the AMIA 2020, 2020

Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research.
Proceedings of the AMIA 2020, 2020

2018
Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data.
J. Am. Medical Informatics Assoc., 2018

Uncovering exposures responsible for birth season - disease effects: a global study.
J. Am. Medical Informatics Assoc., 2018

2017
Accuracy of an automated knowledge base for identifying drug adverse reactions.
J. Biomed. Informatics, 2017

Toward multimodal signal detection of adverse drug reactions.
J. Biomed. Informatics, 2017

2016
Hierarchical models for multiple, rare outcomes using massive observational healthcare databases.
Stat. Anal. Data Min., 2016

2015
Feasibility and utility of applications of the common data model to multiple, disparate observational health databases.
J. Am. Medical Informatics Assoc., 2015

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

2014
ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus.
BMC Bioinform., 2014

Transforming NHANES Database to the OMOP Common Data Model.
Proceedings of the AMIA 2014, 2014

2013
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records.
BMC Medical Informatics Decis. Mak., 2013

Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project.
J. Am. Medical Informatics Assoc., 2013

2011
Literature-aided interpretation of gene expression data with the weighted global test.
Briefings Bioinform., 2011

DutchHatTrick: Semantic Query Modeling, ConText, Section Detection, and Match Score Maximization.
Proceedings of The Twentieth Text REtrieval Conference, 2011

2010
Rewriting and suppressing UMLS terms for improved biomedical term identification.
J. Biomed. Semant., 2010

GeneE: Gene and protein query expansion with disambiguation.
Bioinform., 2010

A Concept Annotation System for Clinical Records.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

2009
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.
BMC Bioinform., 2009

Literature-based priors for gene regulatory networks.
Bioinform., 2009

A dictionary to identify small molecules and drugs in free text.
Bioinform., 2009

2008
Literature-based concept profiles for gene annotation: The issue of weighting.
Int. J. Medical Informatics, 2008

Jane: suggesting journals, finding experts.
Bioinform., 2008

2007
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.
J. Biomed. Informatics, 2007

Do Self-Statements Enhance the Effectiveness of Virtual Reality Exposure Therapy? A Comparative Evaluation in Acrophobia.
Cyberpsychology Behav. Soc. Netw., 2007

Cross Language Information Retrieval for Biomedical Literature.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

2006
Concept Based Document Retrieval for Genomics Literature.
Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005
Word Sense Disambiguation in the Biomedical Domain: An Overview.
J. Comput. Biol., 2005

Thesaurus-based disambiguation of gene symbols.
BMC Bioinform., 2005

TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization.
Proceedings of the Fourteenth Text REtrieval Conference, 2005

2004
Distribution of information in biomedical abstracts and full-text publications.
Bioinform., 2004

Contextual Annotation of Web Pages for Interactive Browsing.
Proceedings of the MEDINFO 2004, 2004

2003
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification.
Proceedings of The Twelfth Text REtrieval Conference, 2003

2002
Effect of an external viewpoint on therapist performance in virtual reality exposure therapy.
Proceedings of the Extended abstracts of the 2002 Conference on Human Factors in Computing Systems, 2002

2001
Research on Presence in Virtual Reality: A Survey.
Cyberpsychology Behav. Soc. Netw., 2001

2000
Design of virtual reality exposure therapy systems: task analysis.
Proceedings of the CHI '00 Extended Abstracts on Human Factors in Computing Systems, 2000

1999
Information retrieval systems using an associative conceptual space.
Proceedings of the 7th European Symposium on Artificial Neural Networks, 1999


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