Martha L. Bulyk

According to our database, Martha L. Bulyk authored at least 20 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Computational Challenges and Artificial Intelligence in Precision Medicine.

Olga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

Session Introduction.

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Alexander A. Morgan, Predrag Radivojac, Nicholas P. Tatonetti

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

Session introduction.

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Reading between the genes: interpreting non-coding DNA in high-throughput.

Joanne Berghout, Yves A. Lussier, Francesca Vitali, Martha L. Bulyk, Maricel G. Kann, Jason H. Moore

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2015

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.

Maxwell A. Hume, Luis A. Barrera, Stephen S. Gisselbrecht, Martha L. Bulyk

Nucleic Acids Res., 2015

2013

Bayesian hierarchical model of protein-binding microarray <i>k</i>-mer data reduces noise and identifies transcription factor subclasses and preferred <i>k</i>-mers.

Bo Jiang, Jun S. Liu, Martha L. Bulyk

Bioinform., 2013

2012

LOESS correction for length variation in gene set-based genomic sequence analysis.

Anton Aboukhalil, Martha L. Bulyk

Bioinform., 2012

Intrinsic Disorder Within and Flanking the DNA-Binding Domains of Human Transcription Factors.

Xin Guo, Martha L. Bulyk, Alexander J. Hartemink

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida Albicans.

Raluca Gordân, Saumyadipta Pyne, Martha L. Bulyk

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions.

Kimberly Robasky, Martha L. Bulyk

Nucleic Acids Res., 2011

2010

Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions.

Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk

Proceedings of the Research in Computational Molecular Biology, 2010

2009

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.

Daniel E. Newburger, Martha L. Bulyk

Nucleic Acids Res., 2009

Predicting the binding preference of transcription factors to individual DNA <i>k</i>-mers.

Trevis M. Alleyne, Lourdes Peña Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, Timothy R. Hughes

Bioinform., 2009

2008

Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.

Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk

J. Comput. Biol., 2008

Functional Trends in Structural Classes of the DNA Binding Domains of Regulatory Transcription Factors.

Rachel Patton McCord, Martha L. Bulyk

Proceedings of the Biocomputing 2008, 2008

Session Introduction.

Martha L. Bulyk, Ernest Fraenkel, Alexander J. Hartemink, Yael Mandel-Gutfreund

Proceedings of the Biocomputing 2008, 2008

2007

Session Introduction.

Martha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo

Proceedings of the Biocomputing 2007, 2007

2006

Expression-Guided In Silico Evaluation of Candidate <i>Cis</i> Regulatory Codes for <i>Drosophila</i> Muscle Founder Cells.

Anthony A. Philippakis, Brian W. Busser, Stephen S. Gisselbrecht, Fangxue Sherry He, Beatriz Estrada, Alan M. Michelson, Martha L. Bulyk

PLoS Comput. Biol., 2006

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.

Bertrand R. Huber, Martha L. Bulyk

BMC Bioinform., 2006

2005

ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules.

Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk

Proceedings of the Biocomputing 2005, 2005