Marta Cascante

According to our database, Marta Cascante authored at least 24 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Control analysis in the identification of key enzymes driving metabolic adaptations: Towards drug target discovery.

Pedro de Atauri, Carles Foguet, Marta Cascante

Biosyst., September, 2023

2021

Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations.

Pedro de Atauri, Míriam Tarrado-Castellarnau, Josep Tarragó-Celada, Carles Foguet, Effrosyni Karakitsou, Josep J. Centelles, Marta Cascante

PLoS Comput. Biol., 2021

2019

p13CMFA: Parsimonious 13C metabolic flux analysis.

Carles Foguet, Anusha Jayaraman, Silvia Marin, Vitaly A. Selivanov, Pablo A. Moreno, Ramon Messeguer, Pedro de Atauri, Marta Cascante

PLoS Comput. Biol., 2019

Interoperable and scalable data analysis with microservices: applications in metabolomics.

Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth

Bioinform., 2019

2018

Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells.

Igor Marín de Mas, Esther Aguilar, Erika Zodda, Cristina Balcells, Silvia Marin, Guido Dallmann, Timothy M. Thomson, Balázs Papp, Marta Cascante

PLoS Comput. Biol., 2018

2017

The future of metabolomics in ELIXIR.

Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck

F1000Research, 2017

MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes.

Vitaly A. Selivanov, Adrián Benito, Anibal Miranda, Esther Aguilar, Ibrahim Halil Polat, Josep J. Centelles, Anusha Jayaraman, Paul W.-N. Lee, Silvia Marin, Marta Cascante

BMC Bioinform., 2017

Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach.

Igor Marín de Mas, Eric Fanchon, Balázs Papp, Susana G. Kalko, Josep Roca, Marta Cascante

Bioinform., 2017

2016

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data.

Carles Foguet, Silvia Marin, Vitaly A. Selivanov, Eric Fanchon, Wai-Nang Paul Lee, Joan J. Guinovart, Pedro de Atauri, Marta Cascante

PLoS Comput. Biol., 2016

ChainRank, a chain prioritisation method for contextualisation of biological networks.

Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier

BMC Bioinform., 2016

2015

Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes.

Michael Binns, Pedro de Atauri, Anestis Vlysidis, Marta Cascante, Constantinos Theodoropoulos

BMC Bioinform., 2015

2014

¹³C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in L6E9 myotubes.

Shirley Guzmán, Silvia Marin, Anibal Miranda, Vitaly A. Selivanov, Josep J. Centelles, Romain Harmancey, Fatima Smih, Annie Turkieh, Yves Durocher, Antonio Zorzano, Philippe Rouet, Marta Cascante

BMC Syst. Biol., 2014

2012

Multistationary and Oscillatory Modes of Free Radicals Generation by the Mitochondrial Respiratory Chain Revealed by a Bifurcation Analysis.

Vitaly A. Selivanov, Marta Cascante, Mark Friedman, Mark F. Schumaker, Massimo Trucco, Tatyana V. Votyakova

PLoS Comput. Biol., 2012

2011

A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease.

Nil Turan, Susana G. Kalko, Anna Stincone, Kim Clarke, Ayesha Sabah, Katherine Howlett, S. John Curnow, Diego A. Rodriguez, Marta Cascante, Laura O'Neill, Stuart Egginton, Josep Roca, Francesco Falciani

PLoS Comput. Biol., 2011

Reactive Oxygen Species Production by Forward and Reverse Electron Fluxes in the Mitochondrial Respiratory Chain.

Vitaly A. Selivanov, Tatyana V. Votyakova, Violetta N. Pivtoraiko, Jennifer Zeak, Tatiana Sukhomlin, Massimo Trucco, Josep Roca, Marta Cascante

PLoS Comput. Biol., 2011

Compartmentation of glycogen metabolism revealed from ¹³C isotopologue distributions.

Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante

BMC Syst. Biol., 2011

Knowledge management for systems biology a general and visually driven framework applied to translational medicine.

Dieter Maier, Wenzel Kalus, Martin Wolff, Susana G. Kalko, Josep Roca, Igor Marín de Mas, Nil Turan, Marta Cascante, Francesco Falciani, Miguel Hernandez, Jordi Villà-Freixa, Sascha Losko

BMC Syst. Biol., 2011

Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes.

Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes

Biosyst., 2011

2010

Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis.

Vitaly A. Selivanov, Pedro Vizán, Faustino Mollinedo, Teresa W.-M. Fan, Paul W.-N. Lee, Marta Cascante

BMC Syst. Biol., 2010

2009

Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia.

Vitaly A. Selivanov, Tatyana V. Votyakova, Jennifer Zeak, Massimo Trucco, Josep Roca, Marta Cascante

PLoS Comput. Biol., 2009

2007

Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy.

Julio Vera, Raul Curto, Marta Cascante, Néstor V. Torres

Bioinform., 2007

2006

Software for dynamic analysis of tracer-based metabolomic data: estimation of metabolic fluxes and their statistical analysis.

Vitaly A. Selivanov, Silvia Marin, Paul W.-N. Lee, Marta Cascante

Bioinform., 2006

2005

Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells.

Vitaly A. Selivanov, Ludmilla E. Meshalkina, Olga N. Solovjeva, Philip W. Kuchel, Antonio Ramos-Montoya, German A. Kochetov, Paul W.-N. Lee, Marta Cascante

Bioinform., 2005

2004

An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites.

Vitaly A. Selivanov, Joaquim Puigjaner, Antonio Sillero, Josep J. Centelles, Antonio Ramos-Montoya, Paul W.-N. Lee, Marta Cascante

Bioinform., 2004