Mark R. Chance

According to our database, Mark R. Chance authored at least 26 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Functional characterization of co-phosphorylation networks.

Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk

Bioinform., 2022

2021

Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.

Marzieh Ayati, Mark R. Chance, Mehmet Koyutürk

Bioinform., 2021

2019

CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis.

Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance

PLoS Comput. Biol., 2019

2017

The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.

Danica Wiredja, Mehmet Koyutürk, Mark R. Chance

Bioinform., 2017

Linearity of network proximity measures: implications for set-based queries and significance testing.

Sean Maxwell, Mark R. Chance, Mehmet Koyutürk

Bioinform., 2017

2016

A dynamical systems model of progesterone receptor interactions with inflammation in human parturition.

Douglas Brubaker, Alethea Barbaro, Mark R. Chance, Sam Mesiano

BMC Syst. Biol., 2016

MoBaS on Phosphorylation Data.

Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Goutham Narla, Mark R. Chance, Mehmet Koyutürk

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring.

Marzieh Ayati, Sinan Erten, Mark R. Chance, Mehmet Koyutürk

EURASIP J. Bioinform. Syst. Biol., 2015

2014

Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance.

Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network.

Sean Maxwell, Mark R. Chance, Mehmet Koyutürk

Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013

Network Signatures of Survival in Glioblastoma Multiforme.

Vishal N. Patel, Giridharan Gokulrangan, Salim A. Chowdhury, Yanwen Chen, Andrew E. Sloan, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance

PLoS Comput. Biol., 2013

Session introduction.

Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

MAGNET: MicroArray Gene expression and Network Evaluation Toolkit.

George C. Linderman, Mark R. Chance, Gürkan Bebek

Nucleic Acids Res., 2012

Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes.

Xiaowei Guan, Mark R. Chance, Jill S. Barnholtz-Sloan

J. Clin. Bioinform., 2012

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.

Yu Liu, Sean Maxwell, Tao Feng, Xiaofeng Zhu, Robert C. Elston, Mehmet Koyutürk, Mark R. Chance

BMC Syst. Biol., 2012

Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.

Yu Liu, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance

BMC Syst. Biol., 2012

Pairwise protein expression classifier for candidate biomarker discovery for early detection of human disease prognosis.

Parminder Kaur, Daniela Schlatzer, Kenneth Cooke, Mark R. Chance

BMC Bioinform., 2012

Network biology methods integrating biological data for translational science.

Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance

Briefings Bioinform., 2012

Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases.

Sinan Erten, Marzieh Ayati, Yu Liu, Mark R. Chance, Mehmet Koyutürk

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Frontiers of Oncology: Biobanking Resources for the 21^stCentury.

Jill S. Barnholtz-Sloan, Mark R. Chance

J. Clin. Bioinform., 2011

Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.

Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk

J. Comput. Biol., 2011

BiC: a web server for calculating bimodality of coexpression between gene and protein networks.

George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek

Bioinform., 2011

Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea.

Yu Liu, Sanjay R. Patel, Rod K. Nibbe, Sean Maxwell, Salim A. Chowdhury, Mehmet Koyutürk, Xiaofeng Zhu, Emma Larkin, Sarah Buxbaum, Naresh Punjabi, Sina Gharib, Susan Redline, Mark R. Chance

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Session Introduction.

Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer.

Rod K. Nibbe, Mehmet Koyutürk, Mark R. Chance

PLoS Comput. Biol., 2010

PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling.

Gürkan Bebek, Vishal N. Patel, Mark R. Chance

BMC Bioinform., 2010