Mark L. Blaxter

According to our database, Mark L. Blaxter authored at least 20 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.

Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy

BMC Bioinform., December, 2023

2017

BlobTools: Interrogation of genome assemblies.

Dominik R. Laetsch, Mark L. Blaxter

F1000Research, 2017

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.

Richard J. Challis, Sujai Kumar, Lewis Stevens, Mark L. Blaxter

Database J. Biol. Databases Curation, 2017

2015

ReproPhylo: An Environment for Reproducible Phylogenomics.

Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt

PLoS Comput. Biol., 2015

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Mick Watson, Marian Thomson, Judith E. Risse, Richard Talbot, Javier Santoyo-Lopez, Karim Gharbi, Mark L. Blaxter

Bioinform., 2015

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton

Bioinform., 2015

2013

afterParty: turning raw transcriptomes into permanent resources.

Martin O. Jones, Mark L. Blaxter

BMC Bioinform., 2013

Badger - an accessible genome exploration environment.

Ben Elsworth, Martin O. Jones, Mark L. Blaxter

Bioinform., 2013

2012

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.

Sujai Kumar, Philipp H. Schiffer, Mark L. Blaxter

Nucleic Acids Res., 2012

2011

iPhy: an integrated phylogenetic workbench for supermatrix analyses.

Martin O. Jones, Georgios D. Koutsovoulos, Mark L. Blaxter

BMC Bioinform., 2011

2010

Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans.

Suresh Swain, Jodie F. Wren, Stephen R. Stürzenbaum, Peter Kille, A. John Morgan, Tjalling Jager, Martijs J. Jonker, Peter K. Hankard, Claus Svendsen, Jenifer Owen, Ann Hedley, Mark L. Blaxter, David J. Spurgeon

BMC Syst. Biol., 2010

2008

ButterflyBase: a platform for lepidopteran genomics.

Alexie Papanicolaou, Steffi Gebauer-Jung, Mark L. Blaxter, W. Owen McMillan, Chris D. Jiggins

Nucleic Acids Res., 2008

annot8r: GO, EC and KEGG annotation of EST datasets.

Ralf Schmid, Mark L. Blaxter

BMC Bioinform., 2008

2006

TaxMan: a taxonomic database manager.

Martin O. Jones, Mark L. Blaxter

BMC Bioinform., 2006

2005

Exploring Parasite Gene Space.

James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter

BMC Bioinform., 2005

2004

NEMBASE: a resource for parasitic nematode ESTs.

John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter

Nucleic Acids Res., 2004

prot4EST: Translating Expressed Sequence Tags from neglected genomes.

James Wasmuth, Mark L. Blaxter

BMC Bioinform., 2004

PartiGene-constructing partial genomes.

John Parkinson, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark L. Blaxter

Bioinform., 2004

2003

SimiTri-visualizing similarity relationships for groups of sequences.

John Parkinson, Mark L. Blaxter

Bioinform., 2003

2002

Making sense of EST sequences by CLOBBing them.

John Parkinson, David B. Guiliano, Mark L. Blaxter

BMC Bioinform., 2002