Mark Jones

Orcid: 0000-0002-4091-7089

Affiliations:
  • Delft University of Technology, The Netherlands
  • University of London, Royal Holloway, Egham, Surrey, UK (PhD 2013)


According to our database1, Mark Jones authored at least 79 papers between 2010 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of two.

Timeline

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Bibliography

2024
Orienting undirected phylogenetic networks.
J. Comput. Syst. Sci., March, 2024

A near-linear kernel for bounded-state parsimony distance.
J. Comput. Syst. Sci., March, 2024

A Simple 4-Approximation Algorithm for Maximum Agreement Forests on Multiple Unrooted Binary Trees.
CoRR, 2024

Reconstructing semi-directed level-1 networks using few quarnets.
CoRR, 2024

Encoding Semi-Directed Phylogenetic Networks with Quarnets.
CoRR, 2024

A Wild Sheep Chase Through an Orchard.
CoRR, 2024

Maximizing Network Phylogenetic Diversity.
CoRR, 2024

Maximizing Phylogenetic Diversity under Time Pressure: Planning with Extinctions Ahead.
CoRR, 2024

Exact and Heuristic Computation of the Scanwidth of Directed Acyclic Graphs.
CoRR, 2024

2023
Making a Network Orchard by Adding Leaves.
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

How Can We Maximize Phylogenetic Diversity? Parameterized Approaches for Networks.
Proceedings of the 18th International Symposium on Parameterized and Exact Computation, 2023

2022
Level-2 networks from shortest and longest distances.
Discret. Appl. Math., 2022

A Near-Linear Kernel for Two-Parsimony Distance.
CoRR, 2022

A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees.
Algorithmica, 2022

New FPT Algorithms for Finding the Temporal Hybridization Number for Sets of Phylogenetic Trees.
Algorithmica, 2022

Embedding Phylogenetic Trees in Networks of Low Treewidth.
Proceedings of the 30th Annual European Symposium on Algorithms, 2022

An FPT-Algorithm for Longest Common Subsequence Parameterized by the Maximum Number of Deletions.
Proceedings of the 33rd Annual Symposium on Combinatorial Pattern Matching, 2022

2021
Maximum parsimony distance on phylogenetic trees: A linear kernel and constant factor approximation algorithm.
J. Comput. Syst. Sci., 2021

A unifying characterization of tree-based networks and orchard networks using cherry covers.
Adv. Appl. Math., 2021

2020
Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Maximum parsimony distance on phylogenetictrees: a linear kernel and constant factor approximation algorithm.
CoRR, 2020

Combining Networks Using Cherry Picking Sequences.
Proceedings of the Algorithms for Computational Biology, 2020

2019
Treewidth of display graphs: bounds, brambles and applications.
J. Graph Algorithms Appl., 2019

Cutting an alignment with Ockham's razor.
CoRR, 2019

Rooting for phylogenetic networks.
CoRR, 2019

2018
A third strike against perfect phylogeny.
CoRR, 2018

Polynomial-Time Algorithms for Phylogenetic Inference Problems.
Proceedings of the Algorithms for Computational Biology - 5th International Conference, 2018

2017
Parameterized Complexity of Directed Steiner Tree on Sparse Graphs.
SIAM J. Discret. Math., 2017

Rearrangement moves on rooted phylogenetic networks.
PLoS Comput. Biol., 2017

Parameterized complexity of the k-arc Chinese Postman Problem.
J. Comput. Syst. Sci., 2017

Cryptographic enforcement of information flow policies without public information via tree partitions.
J. Comput. Secur., 2017

Acyclicity in edge-colored graphs.
Discret. Math., 2017

Chinese Postman Problem on edge-colored multigraphs.
Discret. Appl. Math., 2017

Exploring the tiers of rooted phylogenetic network space using tail moves.
CoRR, 2017

Consistency of orthology and paralogy constraints in the presence of gene transfers.
CoRR, 2017

Constructing a Consensus Phylogeny from a Leaf-Removal Distance.
CoRR, 2017

Parameterized and Approximation Algorithms for the Load Coloring Problem.
Algorithmica, 2017

Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract).
Proceedings of the String Processing and Information Retrieval, 2017

2016
Kernelization, Max-Cut Above Tight Bounds.
Encyclopedia of Algorithms, 2016

On the Workflow Satisfiability Problem with Class-Independent Constraints for Hierarchical Organizations.
ACM Trans. Priv. Secur., 2016

The Mixed Chinese Postman Problem Parameterized by Pathwidth and Treedepth.
SIAM J. Discret. Math., 2016

Algorithms for the workflow satisfiability problem engineered for counting constraints.
J. Comb. Optim., 2016

Linear-vertex kernel for the problem of packing r-stars into a graph without long induced paths.
Inf. Process. Lett., 2016

Parameterizations of Test Cover with Bounded Test Sizes.
Algorithmica, 2016

2015
Max-Cut Parameterized Above the Edwards-Erdős Bound.
Algorithmica, 2015

On the Workflow Satisfiability Problem with Class-independent Constraints.
Proceedings of the 10th International Symposium on Parameterized and Exact Computation, 2015

Structural Parameterizations of the Mixed Chinese Postman Problem.
Proceedings of the Algorithms - ESA 2015, 2015

Optimal Constructions for Chain-Based Cryptographic Enforcement of Information Flow Policies.
Proceedings of the Data and Applications Security and Privacy XXIX, 2015

Cryptographic Enforcement of Information Flow Policies Without Public Information.
Proceedings of the Applied Cryptography and Network Security, 2015

2014
Satisfying more than half of a system of linear equations over GF(2): A multivariate approach.
J. Comput. Syst. Sci., 2014

Iterative Plan Construction for the Workflow Satisfiability Problem.
J. Artif. Intell. Res., 2014

Parameterized algorithms for load coloring problem.
Inf. Process. Lett., 2014

Fixed-Parameter Tractability of Satisfying Beyond the Number of Variables.
Algorithmica, 2014

Parameterized Directed k-Chinese Postman Problem and k Arc-Disjoint Cycles Problem on Euler Digraphs.
Proceedings of the Graph-Theoretic Concepts in Computer Science, 2014

Engineering Algorithms for Workflow Satisfiability Problem with User-Independent Constraints.
Proceedings of the Frontiers in Algorithmics - 8th International Workshop, 2014

2013
Parameterized complexity of MaxSat Above Average.
Theor. Comput. Sci., 2013

Maximum balanced subgraph problem parameterized above lower bound.
Theor. Comput. Sci., 2013

Parameterized Complexity of Satisfying Almost All Linear Equations over $\mathbb{F}_{2}$.
Theory Comput. Syst., 2013

A new bound for 3-satisfiable MaxSat and its algorithmic application.
Inf. Comput., 2013

Polynomial Kernels for λ-extendible Properties Parameterized Above the Poljak-Turzík Bound.
CoRR, 2013

Pattern-Based Plan Construction for the Workflow Satisfiability Problem.
CoRR, 2013

Polynomial Kernels for lambda-extendible Properties Parameterized Above the Poljak-Turzik Bound.
Proceedings of the IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, 2013

Fixed-Parameter Tractability of Workflow Satisfiability in the Presence of Seniority Constraints.
Proceedings of the Frontiers in Algorithmics <i>and</i> Algorithmic Aspects in Information and Management, 2013

2012
Note on Large Subsets of Binary Vectors with Similar Distances.
SIAM J. Discret. Math., 2012

Parameterized Eulerian strong component arc deletion problem on tournaments.
Inf. Process. Lett., 2012

Directed Acyclic Subgraph Problem Parameterized above Raman-Saurabh Bound
CoRR, 2012

Note on Existence and Non-Existence of Large Subsets of Binary Vectors with Similar Distances
CoRR, 2012

A New Lower Bound on the Maximum Number of Satisfied Clauses in Max-SAT and Its Algorithmic Applications.
Algorithmica, 2012

Parameterized Study of the Test Cover Problem.
Proceedings of the Mathematical Foundations of Computer Science 2012, 2012

Directed Acyclic Subgraph Problem Parameterized above the Poljak-Turzik Bound.
Proceedings of the IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, 2012

2011
Kernels for below-upper-bound parameterizations of the hitting set and directed dominating set problems.
Theor. Comput. Sci., 2011

Parameterized Complexity of Satisfying Almost All Linear Equations over $\mathbb{F}_2$
CoRR, 2011

Lower Bound for Max-$r$-Lin2 and its Applications in Algorithmics and Graph Theory
CoRR, 2011

Simultaneously Satisfying Linear Equations Over F_2: MaxLin2 and Max-r-Lin2 Parameterized Above Average.
Proceedings of the IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, 2011

A New Bound for 3-Satisfiable Maxsat and Its Algorithmic Application.
Proceedings of the Fundamentals of Computation Theory - 18th International Symposium, 2011

2010
Note on Max Lin-2 above Average.
Inf. Process. Lett., 2010

Linear-Number-of-Variables Kernel for Unit-Conflict-Free-Max-Sat Parameterized Above Expectation
CoRR, 2010

Systems of Linear Equations over F<sub>2</sub> and Problems Parameterized above Average.
Proceedings of the Algorithm Theory, 2010

A New Lower Bound on the Maximum Number of Satisfied Clauses in Max-SAT and Its Algorithmic Application.
Proceedings of the Parameterized and Exact Computation - 5th International Symposium, 2010


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