Mark Jenkinson
Orcid: 0000-0001-6043-0166
According to our database1,
Mark Jenkinson
authored at least 119 papers
between 1998 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on orcid.org
-
on id.loc.gov
-
on d-nb.info
On csauthors.net:
Bibliography
2024
Anatomically plausible segmentations: Explicitly preserving topology through prior deformations.
Medical Image Anal., 2024
2023
Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria.
NeuroImage, March, 2023
Automated detection of cerebral microbleeds on MR images using knowledge distillation framework.
Frontiers Neuroinformatics, March, 2023
Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data.
NeuroImage, 2023
Improved Flexibility and Interpretability of Large Vessel Stroke Prognostication Using Image Synthesis and Multi-task Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023
2022
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients.
Neuroinformatics, 2022
NeuroImage, 2022
STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation.
Medical Image Anal., 2022
Uncertainty Categories in Medical Image Segmentation: A Study of Source-Related Diversity.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2022
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022
Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Mutual Information Neural Estimation for Unsupervised Multi-Modal Registration of Brain Images.
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022
2021
Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal.
NeuroImage, 2021
NeuroImage, 2021
Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets.
NeuroImage, 2021
Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images.
Medical Image Anal., 2021
Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images.
Medical Image Anal., 2021
Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning.
Frontiers Neuroinformatics, 2021
CoRR, 2021
Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis, 2021
TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021
Self-Supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021
2020
The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants.
NeuroImage, 2020
Proceedings of the Medical Image Understanding and Analysis - 24th Annual Conference, 2020
Proceedings of the Medical Image Understanding and Analysis - 24th Annual Conference, 2020
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020
A 2-Step Deep Learning Method with Domain Adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges, 2020
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020
2019
Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework.
IEEE Trans. Medical Imaging, 2019
Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding.
NeuroImage, 2019
Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference.
NeuroImage, 2019
Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants.
NeuroImage, 2019
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019
2018
Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults.
NeuroImage, 2018
Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank.
NeuroImage, 2018
2017
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
PLoS Comput. Biol., 2017
Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging.
NeuroImage, 2017
NeuroImage, 2017
2016
Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age.
NeuroImage, 2016
Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool.
NeuroImage, 2016
Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise.
NeuroImage, 2016
BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities.
NeuroImage, 2016
Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease.
NeuroImage, 2016
Proceedings of the Machine Learning in Medical Imaging - 7th International Workshop, 2016
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
2015
Quantitative Susceptibility Mapping by Inversion of a Perturbation Field Model: Correlation With Brain Iron in Normal Aging.
IEEE Trans. Medical Imaging, 2015
Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI.
NeuroImage, 2015
2014
NeuroImage, 2014
Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention.
NeuroImage, 2014
Optimizing full-brain coverage in human brain MRI through population distributions of brain size.
NeuroImage, 2014
NeuroImage, 2014
2013
IEEE Trans. Medical Imaging, 2013
Advances in diffusion MRI acquisition and processing in the Human Connectome Project.
NeuroImage, 2013
Human Connectome Project informatics: Quality control, database services, and data visualization.
NeuroImage, 2013
NeuroImage, 2013
Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013
The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013
Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation.
Proceedings of the Information Processing in Medical Imaging, 2013
Edge- and Detail-Preserving Sparse Image Representations for Deformable Registration of Chest MRI and CT Volumes.
Proceedings of the Information Processing in Medical Imaging, 2013
2012
Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis.
NeuroImage, 2012
Assessment of physiological noise modelling methods for functional imaging of the spinal cord.
NeuroImage, 2012
MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration.
Medical Image Anal., 2012
Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012
Textural mutual information based on cluster trees for multimodal deformable registration.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012
2011
IEEE Trans. Medical Imaging, 2011
Imaging dopamine receptors in humans with [<sup>11</sup>C]-(+)-PHNO: Dissection of D3 signal and anatomy.
NeuroImage, 2011
NeuroImage, 2011
NeuroImage, 2011
Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data.
NeuroImage, 2011
Frontiers Neuroinformatics, 2011
Non-rigid image registration through efficient discrete optimization.
Proceedings of the Medical Image Understanding and Analysis, 2011
Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011
Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011
2010
Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease.
NeuroImage, 2010
Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8].
NeuroImage, 2010
A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum.
NeuroImage, 2010
Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447].
NeuroImage, 2010
Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects.
Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine, 2010
2009
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
NeuroImage, 2009
An evaluation of four automatic methods of segmenting the subcortical structures in the brain.
NeuroImage, 2009
Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009
2008
Physiological noise modelling for spinal functional magnetic resonance imaging studies.
NeuroImage, 2008
Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008
Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008
2007
Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX.
NeuroImage, 2007
Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images.
Image Vis. Comput., 2007
Proceedings of the Information Processing in Medical Imaging, 2007
2006
NeuroImage, 2006
A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex.
NeuroImage, 2006
A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures.
Proceedings of the Biomedical Image Registration, Third International Workshop, 2006
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006
2005
Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005
2004
IEEE Trans. Medical Imaging, 2004
NeuroImage, 2004
A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004
Proceedings of the Medical Imaging and Augmented Reality: Second International Workshop, 2004
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2004
2003
Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex.
NeuroImage, 2003
Proceedings of the Biomedical Image Registration, Second International Workshop, 2003
2002
Fast, Fully Automated Global and Local Magnetic Field Optimization for fMRI of the Human Brain.
NeuroImage, 2002
Accurate, Robust, and Automated Longitudinal and Cross-Sectional Brain Change Analysis.
NeuroImage, 2002
Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images.
NeuroImage, 2002
2001
Medical Image Anal., 2001
1999
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999
1998
Proceedings of the Computer Vision, 1998