Mark James Abraham

According to our database, Mark James Abraham authored at least 6 papers between 2011 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS.

Szilárd Páll, Artem A. Zhmurov, Paul Bauer, Mark James Abraham, Magnus Lundborg, Alan Gray, Berk Hess, Erik Lindahl

CoRR, 2020

2019

Sharing Data from Molecular Simulations.

Mark James Abraham, Rossen Apostolov, Jonathan Barnoud, Paul Bauer, Christian Blau, Alexandre M. J. J. Bonvin, Matthieu Chavent, John D. Chodera, Karmen Condic-Jurkic, Lucie Delemotte, Helmut Grubmüller, Rebecca J. Howard, E. Joseph Jordan, Erik Lindahl, Samuli Ollila, Jana Selent, Daniel G. A. Smith, Phillip J. Stansfeld, Johanna K. S. Tiemann, Mikaël Trellet, Christopher J. Woods, Artem A. Zhmurov

J. Chem. Inf. Model., 2019

2017

Trends in Data Locality Abstractions for HPC Systems.

Didem Unat, Anshu Dubey, Torsten Hoefler, John Shalf, Mark James Abraham, Mauro Bianco, Bradford L. Chamberlain, Romain Cledat, H. Carter Edwards, Hal Finkel, Karl Fuerlinger, Frank Hannig, Emmanuel Jeannot, Amir Kamil, Jeff Keasler, Paul H. J. Kelly, Vitus J. Leung, Hatem Ltaief, Naoya Maruyama, Chris J. Newburn, Miquel Pericàs

IEEE Trans. Parallel Distributed Syst., 2017

2014

Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS.

Szilárd Páll, Mark James Abraham, Carsten Kutzner, Berk Hess, Erik Lindahl

Proceedings of the Solving Software Challenges for Exascale, 2014

2011

Optimization of parameters for molecular dynamics simulation using smooth particle-mesh Ewald in GROMACS 4.5.

Mark James Abraham, Jill E. Gready

J. Comput. Chem., 2011

Performance enhancements for GROMACS nonbonded interactions on BlueGene.

Mark James Abraham

J. Comput. Chem., 2011