Mark H. Ellisman

According to our database, Mark H. Ellisman authored at least 54 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease.

Sofia Farina, Valérie Voorsluijs, Sonja Fixemer, David S. Bouvier, Susanne Claus, Mark H. Ellisman, Stéphane P. A. Bordas, Alexander Skupin

PLoS Comput. Biol., 2023

2020

NeuroKube: An Automated and Autoscaling Neuroimaging Reconstruction Framework using Cloud Native Computing and A.I.

Matthew Madany, Kyle Marcus, Steven Peltier, Mark H. Ellisman, Ilkay Altintas

Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

2017

Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.

Cibele Vieira Falkenberg, Evren U. Azeloglu, Mark Stothers, Thomas J. Deerinck, Yibang Chen, John C. He, Mark H. Ellisman, James C. Hone, Ravi Iyengar, Leslie M. Loew

PLoS Comput. Biol., 2017

Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.

Chris Churas, Alex J. Perez, Hiroyuki Hakozaki, Willy Wong, David Lee, Steven Peltier, Mark H. Ellisman

Bioinform., 2017

2016

Biological Systems Through the Informational Lens.

Albert F. Lawrence, Tsvi Katchalski, Alex J. Perez, Mark H. Ellisman

Proceedings of the International Conference on Computational Science 2016, 2016

2015

Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca²⁺ Release Patterns in Cardiomyocytes.

Vijay Rajagopal, Gregory Bass, Cameron G. Walker, David J. Crossman, Amorita Petzer, Anthony Hickey, Ivo Siekmann, Masahiko Hoshijima, Mark H. Ellisman, Edmund J. Crampin, Christian Soeller

PLoS Comput. Biol., 2015

2014

EPiK-a Workflow for Electron Tomography in Kepler.

Ruijuan Chen, Xiaohua Wan, Ilkay Altintas, Jianwu Wang, Daniel Crawl, Sebastien Phan, Albert F. Lawrence, Mark H. Ellisman

Proceedings of the International Conference on Computational Science, 2014

Poster: BrainTrek - An immersive environment for investigating neuronal tissue.

Michael Morehead, Quinn Jones, Jared Blatt, Paul Holcomb, Jürgen P. Schultz, Thomas A. DeFanti, Mark H. Ellisman, Gianfranco Doretto, George A. Spirou

Proceedings of the IEEE Symposium on 3D User Interfaces, 2014

2013

Iterative Methods in Large Field Electron Microscope Tomography.

Xiaohua Wan, Sebastien Phan, Albert F. Lawrence, Fa Zhang, Renmin Han, Zhiyong Liu, Mark H. Ellisman

SIAM J. Sci. Comput., 2013

Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images.

Elizabeth Jurrus, Shigeki Watanabe, Richard J. Giuly, António R. C. Paiva, Mark H. Ellisman, Erik M. Jorgensen, Tolga Tasdizen

Neuroinformatics, 2013

The cell: an image library-CCDB: a curated repository of microscopy data.

David N. Orloff, Janet H. Iwasa, Maryann E. Martone, Mark H. Ellisman, Caroline M. Kane

Nucleic Acids Res., 2013

DP2: Distributed 3D image segmentation using micro-labor workforce.

Richard J. Giuly, Keun-Young Kim, Mark H. Ellisman

Bioinform., 2013

Segmentation of mitochondria in electron microscopy images using algebraic curves.

Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Neuron segmentation in electron microscopy images using partial differential equations.

Cory Jay Jones, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Semi-automatic neuron segmentation in electron microscopy images via sparse labeling.

Cory Jay Jones, Ting Liu, Mark H. Ellisman, Tolga Tasdizen

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Watershed merge forest classification for electron microscopy image stack segmentation.

Ting Liu, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen

Proceedings of the IEEE International Conference on Image Processing, 2013

2012

Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics.

Vadim Astakhov, Anita E. Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman

Proceedings of the International Conference on Computational Science, 2012

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets.

Richard J. Giuly, Maryann E. Martone, Mark H. Ellisman

BMC Bioinform., 2012

Electron Tomography and Multiscale Biology.

Albert F. Lawrence, Sebastien Phan, Mark H. Ellisman

Proceedings of the Theory and Applications of Models of Computation, 2012

Watershed merge tree classification for electron microscopy image segmentation.

Ting Liu, Elizabeth Jurrus, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen

Proceedings of the 21st International Conference on Pattern Recognition, 2012

2011

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.

Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel W. Lin, Steven Peltier, Karen I. Stocks, Eric E. Allen, Mark H. Ellisman, Jeffrey S. Grethe, John C. Wooley

Nucleic Acids Res., 2011

Detection of Neuron Membranes in Electron Microscopy Images Using Multi-scale Context and Radon-Like Features.

Mojtaba Seyedhosseini, Ritwik Kumar, Elizabeth Jurrus, Rick Giuly, Mark H. Ellisman, Hanspeter Pfister, Tolga Tasdizen

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases.

Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis.

Abel W. Lin, Ilkay Altintas, Chris Churas, Madhusudan Gujral, Jeffrey S. Grethe, Mark H. Ellisman

Proceedings of the REST: From Research to Practice, 2011

2010

CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.

Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman

Proceedings of the 6th World Congress on Services, 2010

2008

The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data.

Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman

Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008

2007

Examining the Challenges of Scientific Workflows.

Yolanda Gil, Ewa Deelman, Mark H. Ellisman, Thomas Fahringer, Geoffrey C. Fox, Dennis Gannon, Carole A. Goble, Miron Livny, Luc Moreau, Jim Myers

Computer, 2007

Case Studies on the Use of Workflow Technologies for Scientific Analysis: The Biomedical Informatics Research Network and the Telescience Project.

Abel W. Lin, Steven T. Peltier, Jeffrey S. Grethe, Mark H. Ellisman

Proceedings of the Workflows for e-Science, Scientific Workflows for Grids., 2007

2006

High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders.

Diana L. Price, Sunny K. Chow, Natalie A. B. MacLean, Hiroyuki Hakozaki, Steven Peltier, Maryann E. Martone, Mark H. Ellisman

Neuroinformatics, 2006

Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter.

Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth West, Hiromu Otsuka, Sei Naito, Steven Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh, Mark H. Ellisman

Future Gener. Comput. Syst., 2006

The OptIPuter: high-performance, QoS-guaranteed network service for emerging E-science applications.

N. Taesombot, Frank C. Uyeda, Andrew A. Chien, Larry Smarr, Thomas A. DeFanti, Philip M. Papadopoulos, Jason Leigh, Mark H. Ellisman, John A. Orcutt

IEEE Commun. Mag., 2006

"Big Science" and Schizophrenia.

Ron Kikinis, Tina Kapur, Martha Elizabeth Shenton, Jeffrey S. Grethe, Mark H. Ellisman

Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Enabling parallel scientific applications with workflow tools.

Adam Lathers, Mei-Hui Su, A. W. Kulungowski, Abel W. Lin, Gaurang Mehta, Steven Peltier, Ewa Deelman, Mark H. Ellisman

Proceedings of the 2006 IEEE Challenges of Large Applications in Distributed Environments, 2006

Semantically Based Data Integration Environment for Biomedical Research.

Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman

Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005

Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.

Gina E. Sosinsky, Thomas J. Deerinck, Rocco Greco, Casey H. Buitenhuys, Thomas M. Bartol, Mark H. Ellisman

Neuroinformatics, 2005

Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease.

Jeffrey S. Grethe, Chaitan Baru, Amarnath Gupta, Mark James, Bertram Ludäscher, Maryann E. Martone, Philip M. Papadopoulos, Steven Peltier, Arcot Rajasekar, Simone Santini, Ilya Zaslavsky, Mark H. Ellisman

Proceedings of the From Grid to Healthgrid, 2005

A Generalized Service-Oriented Architecture for Remote Control of Scientific Imaging Instruments.

Tomas E. Molina, George Yang, Abel W. Lin, Steven Peltier, Mark H. Ellisman

Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

The Telescience Tools: Version 2.0.

Abel W. Lin, Lu Dai, Khim Ung, Jeff Mock, Steven Peltier, Mark H. Ellisman

Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

Scientific grid activities in Cybermedia Center, Osaka University.

Toyokazu Akiyama, Kazunori Nozaki, Seiichi Kato, Shinji Shimojo, Steven Peltier, Abel W. Lin, Tomas E. Molina, George Yang, David Lee, Mark H. Ellisman, Kiyokazu Yoshida, Hirotaro Mori

Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

The Telescience Project: Application to Middleware Interaction Components.

Abel W. Lin, Lu Dai, Khim Ung, Steven Peltier, Mark H. Ellisman

Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

2004

The Virtual Instrument: Support for Grid-Enabled Mcell Simulations.

Henri Casanova, Francine Berman, Thomas M. Bartol, Erhan Gokcay, Terrence J. Sejnowski, Adam Birnbaum, Jack J. Dongarra, Michelle Miller, Mark H. Ellisman, Marcio Faerman, Graziano Obertelli, Richard Wolski, Stuart M. Pomerantz, Joel R. Stiles

Int. J. High Perform. Comput. Appl., 2004

The emerging role of biogrids.

Mark H. Ellisman, Michael Brady, David Hart, Fang-Pang Lin, Matthias S. Müller, Larry Smarr

Commun. ACM, 2004

Medical Data Federation.

Mark H. Ellisman, Steven Peltier

Proceedings of the Grid 2 - Blueprint for a New Computing Infrastructure, Second Edition, 2004

2003

The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy.

Maryann E. Martone, Shenglan Zhang, Amarnath Gupta, Xufei Qian, Haiyun He, Diana L. Price, Mona Wong, Simone Santini, Mark H. Ellisman

Neuroinformatics, 2003

The Telescience Portal for advanced tomography applications.

Steven Peltier, Abel W. Lin, David Lee, Stephen A. Mock, Stephan Lamont, Tomas E. Molina, Mona Wong, Lu Dai, Maryann E. Martone, Mark H. Ellisman

J. Parallel Distributed Comput., 2003

Global Telescience featuring IPv6 at iGrid2002.

David Lee, Abel W. Lin, Thomas Hutton, Toyokazu Akiyama, Shinji Shimojo, Fang-Pang Lin, Steven Peltier, Mark H. Ellisman

Future Gener. Comput. Syst., 2003

Vertigo in Virtual Reality with Haptics: Case Report.

Erik Viirre, Mark H. Ellisman

Cyberpsychology Behav. Soc. Netw., 2003

Data-intensive e-science frontier research.

Harvey B. Newman, Mark H. Ellisman, John A. Orcutt

Commun. ACM, 2003

Spatially Realistic Computational Physiology: Past, Present and Future.

Joel R. Stiles, W. C. Ford, J. M. Pattillo, Thomas E. Deerinck, Mark H. Ellisman, Thomas M. Bartol, Terrence J. Sejnowski

Proceedings of the Parallel Computing: Software Technology, 2003

2002

High Performance Computing in Electron Microscope Tomography of Complex Biological Structures.

José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo

Proceedings of the High Performance Computing for Computational Science, 2002

2000

Combining Workstations and Supercomputers to Support Grid Applications: The Parallel Tomography Experience.

Shava Smallen, Walfredo Cirne, Jaime Frey, Francine Berman, Richard Wolski, Mei-Hui Su, Carl Kesselman, Stephen J. Young, Mark H. Ellisman

Proceedings of the 9th Heterogeneous Computing Workshop, 2000

1998

Data-Intensive Computing and Digital Libraries.

Reagan W. Moore, Thomas A. Prince, Mark H. Ellisman

Commun. ACM, 1998

1996

Implementing a Collaboratory for Microscopic Digital Anatomy.

Stephen J. Young, Gary Guo You Fan, David Hessler, Stephan Lamont, T. Todd Elvins, Martin Hadida-Hassan, Gary Hanyzewski, James W. Durkin, Philip M. Hubbard, Gordon L. Kindlmann, Eric Wong, Donald P. Greenberg, Sidney Karin, Mark H. Ellisman

Int. J. High Perform. Comput. Appl., 1996

1992

The Distributed Laboratory - An Interactive Visualization Environment for Electron Microscopy and 3D Imaging.

Philip J. Mercurio, T. Todd Elvins, Stephen J. Young, Philip S. Cohen, Kevin R. Fall, Mark H. Ellisman

Commun. ACM, 1992