Mariusz Popenda

According to our database, Mariusz Popenda authored at least 15 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

RNAspider: a webserver to analyze entanglements in RNA 3D structures.

Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak

Nucleic Acids Res., 2022

2020

ElTetrado: a tool for identification and classification of tetrads and quadruplexes.

Tomasz Zok, Mariusz Popenda, Marta Szachniuk

BMC Bioinform., 2020

Topology-based classification of tetrads and quadruplex structures.

Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk

Bioinform., 2020

New models and algorithms for RNA pseudoknot order assignment.

Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak

Int. J. Appl. Math. Comput. Sci., 2020

2018

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk

Nucleic Acids Res., 2018

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.

Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk

BMC Bioinform., 2018

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk

Bioinform., 2018

2015

RNAssess - a web server for quality assessment of RNA 3D structures.

Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz

Nucleic Acids Res., 2015

New in silico approach to assessing RNA secondary structures with non-canonical base pairs.

Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

BMC Bioinform., 2015

2014

RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.

Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

Nucleic Acids Res., 2014

MCQ4Structures to compute similarity of molecule structures.

Tomasz Zok, Mariusz Popenda, Marta Szachniuk

Central Eur. J. Oper. Res., 2014

2010

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Blazewicz, Ryszard W. Adamiak

BMC Bioinform., 2010

2009

An assignment walk through 3D NMR spectrum.

Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz

Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.

Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak

Nucleic Acids Res., 2008

2004

An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes.

Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk

J. Comput. Biol., 2004